LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g3887	ATGGGGTGTGTGATTAGTCGAGAAGTCTCATCTGAAAAAACCTCAGAGGTGAAAGAGGATAGGAATTTGAGTGCTGGATCGAACGGGAAGATAGATGAAAACTCCACGGGGACAGCTGAAGGGGAAGTGGTTGAGGTCCAGAACGTTGGCAACCAAAAGGAAGAGAGAAATGATTATGATGGTGGGGCCCAGGTTCAGCAGCCCCGGGGCAGAAGGAGAAGGTCAAAGCCAAACCCAAGGCTAAGTAACCCTCCGAAGCATTTGCGGGGGGAGCAAGCAGCGGCTGGGTGGCCCCCGTGGCTTACGGCAGTGTGTGGAGAAGCACTTAGTGGGTGGATTCCTCGGAAGGCTGACACATTTGAGAAAATTGATAAGATTGGGCAAGGAACATATAGCAATGTGTACAAAGCTAAAGACATGTTGACTGGTAAAATTGTTGCACTAAAGAAGGTTCGGTTTGACAATTTGGAGCCTGAGAGTGTGAAGTTCATGGCCAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTGTAAAGTTGGAAGGTTTAGTCACATCAAGAATGTCCTGTAGTTTGTATTTGGTGTTTAATTACATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGGATCAAGTTCACCGAGCCTCAGGTCAAATGTTACATGCACCAGCTATTATCAGGACTTGAGCACTGTCATCACCTTCGAGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAGATAGCTGACTTTGGATTGGCATCTTTCTTTGATCCTAACCATAAGCTGCCGATGACTAATCGTGTAGTTACACTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGGAGTGGACCTTTGGAGCGCAGGTTGCATTTTGGGAGAGTTATTGGCAGGAAAGCCAATTATGCCTGGTCGCACAGAGGTGGAGCAGCTGCATAAGATATACAAACTATGTGGTTCCCCCTCAGATGAGTACTGGAAGAAGTCAAAGTTGCCCAATGCTACCTTGTTTAAACCTCGAGAGCCTTACAAGAGATGCATACGAGAGACATTTAAAGATTTTCCACCTTTTGCACTTATGCTTATTGATACTCTTCTTGCACTTGATCCTGCAGAACGGAAGACTGCATCAGATGCCTTAAGAAGTGAGTTCTTCACCACAGAACCTTATGCCTGTGATCCTTCTAGTCTTCCCAAATATCCGCCAAGCAAGGAAATGGATGTTAAACAGCGAGACGATGAAGCAAGGAGACAACGAGCTGCAGGCAAAGCTCAAGTTGATGGTGCAAAGAAACCCCGAACACGTAATCGTGCTAAACCTAATCCTGCTCCTGAAGCCAACGCTGAGCTTCAATCCAACATTGATAGAAGGCGTCTAATAACTCGTGCAAATGCAAAGAGCAAGAGCGAGAAGTTCCCGCCTCCACATCAAGATGGACAACTTGGTTTTCCCTTGGGATCTTCACATCATATTGATTCAGATATTGTTCCTCCTGATGTCTCTTTTAGTTCAACCTCATTTACGCATTCAAAAGAACCGTTCCAAGCTTGGTCAGGTCCCATTGATGCACCCAAGCAGAAGAAACATGCTACCAGTGATGCACTGGATTTATCGAAACAACGTACAGGTGCCCTCAAGAGTAAACGTTAA	1707	0.4546	MGCVISREVSSEKTSEVKEDRNLSAGSNGKIDENSTGTAEGEVVEVQNVGNQKEERNDYDGGAQVQQPRGRRRRSKPNPRLSNPPKHLRGEQAAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFNYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHHLRVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHKLPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPFALMLIDTLLALDPAERKTASDALRSEFFTTEPYACDPSSLPKYPPSKEMDVKQRDDEARRQRAAGKAQVDGAKKPRTRNRAKPNPAPEANAELQSNIDRRRLITRANAKSKSEKFPPPHQDGQLGFPLGSSHHIDSDIVPPDVSFSSTSFTHSKEPFQAWSGPIDAPKQKKHATSDALDLSKQRTGALKSKR	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g3887	568	Gene3D	Transferase(Phosphotransferase) domain 1	203	444	-	-
	Prci3g3887	568	MobiDBLite	consensus disorder prediction	1	93	-	-
	Prci3g3887	568	FunFam	probable serine/threonine-protein kinase At1g54610	203	444	-	-
	Prci3g3887	568	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	240	252	IPR008271	GO:0004672\|GO:0006468
	Prci3g3887	568	MobiDBLite	consensus disorder prediction	412	568	-	-
	Prci3g3887	568	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524
	Prci3g3887	568	FunFam	probable serine/threonine-protein kinase At1g54610	107	202	-	-
	Prci3g3887	568	SMART	serkin_6	120	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g3887	568	Gene3D	Phosphorylase Kinase; domain 1	107	202	-	-
	Prci3g3887	568	MobiDBLite	consensus disorder prediction	423	453	-	-
	Prci3g3887	568	CDD	STKc_CDK9_like	120	404	-	-
	Prci3g3887	568	Pfam	Protein kinase domain	120	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g3887	568	MobiDBLite	consensus disorder prediction	11	26	-	-
	Prci3g3887	568	MobiDBLite	consensus disorder prediction	517	532	-	-
	Prci3g3887	568	SUPERFAMILY	Protein kinase-like (PK-like)	115	411	IPR011009	-
	Prci3g3887	568	ProSiteProfiles	Protein kinase domain profile.	120	404	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci3g3887	568	PANTHER	CELL DIVISION PROTEIN KINASE	118	408	-	-
	Prci3g3887	568	MobiDBLite	consensus disorder prediction	470	492	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g3887	Prci-Chr3	47166437	47173056	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g3887	112	444	Core Cell Cycle Gene Families	AT5G10270	53.295	4.87e-124	372

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Prci3g3887		Pkinase	6.9e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g3887	K08819		-	gmx:100817289	909.057