Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3823 ATGTGCCTCCCTGAGGGAGAGAGAGACAGCCAGAGCTCGATGGCGCTGGAAGCCGTGGTTTTCCCTCAAGACTACCCATTCGGCTATGGCGCTGCCAAGGATCTCTATCCCCTCTGGCCCTTCCACGACGATTTCAACCTTCACAAACAGGAAGACCACCACGACGGCTTTCTCAATCTTCTTGACGACCAAACAGAAAATTATGGTTTCGGAGACTGGACTAATATTTGCTCTTCTGAACTGCATCTCCCGAATCGCGCGTCCTCCGACACCAGTAACAACCCGACGCCCTCGTCGGAAGCCCTTCAAGCGGATTCCTCGAATTCTCGTCCCAAGAGACGCAGGGCAAGGACCCGAAAGAACAAGGAGGAGATCGAGAACCAGAGAATGACGCACATTGCAGTGGAGCGCAATCGAAGAAAGCAGATGAACGAGTACCTCTCTGTTCTTCGCTCTCTCATGCCTGACTCCTACGTCCAAAGGGGCGATCAGGCGTCTATAATAGGAGGGGCCATCAATTTTGTGAAGGAGCTGGAGCAGAGGCTGCAGTTTCTGGGGAGCCAGAAATCTGAGAAGACGCCGTTCTCAGAGTTCTTCACGTTTCCGCAGTACTCGACGAGTCCGAGCGGGAGCGGGGAGAGTCCGATGATGACGGGGGGGGCACCGTCGGGGACGTGCATCGCAGATATAGAGGTGACGATGGTGGAGAGCCACGCGAATCTGAAAATAAGGTCAAGGAAGCGACCGAAGCAGCTGCTGAGGATAGTGTCGGCGCTGTACAGCATGCGTCTCACGATCTTGCATCTCAACGTGACCACAACCGCCGATATCGTGCTCTACTGCATCAGCGTCAAGTTGGAAGAAGAATGCAAGCTGGGATCGGTGGAAGAGATAGCAGGAGCAGTGTACAAAACGCTGGAGGGGATGGAACAAGAGTGCGGGGTGCAGAATCAAGACCCGACTGGTGTGGGGTATACATAA 981 0.5433 MCLPEGERDSQSSMALEAVVFPQDYPFGYGAAKDLYPLWPFHDDFNLHKQEDHHDGFLNLLDDQTENYGFGDWTNICSSELHLPNRASSDTSNNPTPSSEALQADSSNSRPKRRRARTRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQRLQFLGSQKSEKTPFSEFFTFPQYSTSPSGSGESPMMTGGAPSGTCIADIEVTMVESHANLKIRSRKRPKQLLRIVSALYSMRLTILHLNVTTTADIVLYCISVKLEEECKLGSVEEIAGAVYKTLEGMEQECGVQNQDPTGVGYT 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3823 326 MobiDBLite consensus disorder prediction 85 106 - -
Prci3g3823 326 SMART finulus 133 184 IPR011598 GO:0046983
Prci3g3823 326 Gene3D - 117 192 IPR036638 GO:0046983
Prci3g3823 326 PANTHER MAX DIMERIZATION, MAD 92 312 - -
Prci3g3823 326 MobiDBLite consensus disorder prediction 85 125 - -
Prci3g3823 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Prci3g3823 326 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Prci3g3823 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 198 IPR036638 GO:0046983
Prci3g3823 326 CDD bHLH_AtFAMA_like 130 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3823 Prci-Chr3 46871878 46873561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3823 14 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.515 1.53e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g3823 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3823 - - pvu:PHAVU_007G181900g 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3823 3 46871878 46873561 Prci3g3823 3 46871878 46873561 CCT
Prci3g3823 3 46871878 46873561 Prci3g3823 3 46871878 46873561 ECH