Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3822 ATGCGCCTCCTCCTCCTCGTCCTCCTCCTCCCTCCTCCGTTCCCCCTCGCCTGCGCCCAGGTCGATAACACTGGCCCCACTGGCCCTTACTACAACTCCTACACTCCCTCCATGGCCATCATCATCGTCATTCTTGTCGCCGCTCTCTTCCTCACCGGCATTTTCTCCCTCTACATCCGCCACTGCGGCCAATCTTCCGGCTCCGCCCTCCCCAACCTCGCCGCTCGATCCAGACGCCAGCCTCGCGGCCTCGATCCCTCCGTCATCCGCTCCTTCCCGACTCTCGACTACTCCGCAGTCAAGGTTCACAAGATTGGAAAAGGTACCCTGGAATGCGCCGTCTGCCTCAACGAGTTCGAGGACTCCGAGACGCTCCGCCTCATGCCCAAGTGCGACCACGTCTTCCATCCTGACTGTATCGACGAGTGGCTGGCCTCCCACACTACCTGCCCCGTCTGCAGGGCCGACCTCGTCCCTCAACCAGGCGACTCCCTTCATGGACCTCCCGTGCTTGACTCTCGCGCTGATGTCGAATCTCAGAACGACGCTCGGGAACCTCCTGACGTTGACCGAGAGGCCGCCGAGCCCGATGTCAGGTGTTTCAATCAGAGGCTGAACCCGGACAGTGCGCGAGGTTCTCGATCGAGTCAGCCGGTATGGTGGGCGAGGTCTCACTCGACTGGGCACTCGCTGCTCCAGCCGGGGGAAAACACCGACAGGTACACTCTGAGACTGCCGGCGGACGTGAGGAACAGGCTGCTCAATCAGAAATTTCATCGGGCCACAAGCTTGGTAATCTTGCCGGGGGAAAGTAGTTCGAGGAGGGGATATCGAACCGGAGGGGAGGGTAGTAGCAGGGGAAGGTTTTCGAGGCGACTGGACCGCGGTTTTAAATCAGACCGATGGGTTTTCACGATGGCGCCGCCGTTCTTAGTGAGGGCGTCATCAATCAGGTCGCCGAAGGTGGCTAGTAACAGTGCCGCCGTTGAAGAGACCTCCGCCGACCCCATCATGCCACCCTTGGCGGTGGACTCGGCCCGGCCTCCGGTTTAG 1053 0.6116 MRLLLLVLLLPPPFPLACAQVDNTGPTGPYYNSYTPSMAIIIVILVAALFLTGIFSLYIRHCGQSSGSALPNLAARSRRQPRGLDPSVIRSFPTLDYSAVKVHKIGKGTLECAVCLNEFEDSETLRLMPKCDHVFHPDCIDEWLASHTTCPVCRADLVPQPGDSLHGPPVLDSRADVESQNDAREPPDVDREAAEPDVRCFNQRLNPDSARGSRSSQPVWWARSHSTGHSLLQPGENTDRYTLRLPADVRNRLLNQKFHRATSLVILPGESSSRRGYRTGGEGSSRGRFSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPKVASNSAAVEETSADPIMPPLAVDSARPPV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3822 350 FunFam E3 ubiquitin-protein ligase ATL6 72 160 - -
Prci3g3822 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Prci3g3822 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 176 - -
Prci3g3822 350 SMART ring_2 112 153 IPR001841 -
Prci3g3822 350 MobiDBLite consensus disorder prediction 164 217 - -
Prci3g3822 350 MobiDBLite consensus disorder prediction 320 350 - -
Prci3g3822 350 CDD RING-H2_EL5-like 111 154 - -
Prci3g3822 350 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Prci3g3822 350 MobiDBLite consensus disorder prediction 177 198 - -
Prci3g3822 350 Pfam Ring finger domain 111 154 IPR001841 -
Prci3g3822 350 SUPERFAMILY RING/U-box 106 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3822 Prci-Chr3 46852956 46854272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3822 3 314 Rapid Response to Elicitors AT3G05200 46.296 5.39e-77 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3822 K10664 - gmx:100810865 392.119