Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3818 ATGGATCATCAAGGGCATAACCAGAACCCATCCATGGGGGTTGTCAGCAGTGGAGCTCAACTGCCTTATGCTTCAAACCCATACCAGCCGACCCAAATAACTGCAACACCAGGATCCACCGCTGCATCAGTCGGGACCGTTCAATACAGTGGTCAGCCTGCCGGAGCTCAACTGGGACAACACCAAATTGCTTATCAGCACATTCACCAGCAACAGCAGCAGCAACTTCAGCAGCAACTCCAAACCTTTTGGACAAATCAGTACCAAGAAATTGAGAAGGCTACTGATTTCAAGAATCACAGCCTTCCCTTGGCCAGGATCAAGAAGATAATGAAAGCTGATGAGGATGTTCGGATGATATCAGCTGAGGCGCCAGTCATATTTGCAAGGGCATGTGAGATGTTTATACTAGAGCTGACCTTGCGTTCTTGGAATCACACTGAGGAGAACAAAAGGAGAACGCTTCAGAAGAACGATATTGCAGCAGCAATCACAAGGACTGATATCTTTGATTTCTTGGTTGACATCGTGCCCCGTGAGGATTTGAAAGATGAAGTGCTTGCATCAATCCCTAGAGGGACAATGCCGGTTGCAGGGCATGCTGATGCACTTCCGTATTGTTATATGCCACCTCAGCATGCACCGCAAGTAGGCACTGCTGGTGTCATAATGGGGAAGCCTGTGATGGACCCCACCATGTATGCCCAACAGTCCCATCCTTACATGGCACACCAAATGTGGCCACAGCCTCAAGAGCAACGACAATCAACTCCAGATAGTTAG 783 0.4866 MDHQGHNQNPSMGVVSSGAQLPYASNPYQPTQITATPGSTAASVGTVQYSGQPAGAQLGQHQIAYQHIHQQQQQQLQQQLQTFWTNQYQEIEKATDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGHADALPYCYMPPQHAPQVGTAGVIMGKPVMDPTMYAQQSHPYMAHQMWPQPQEQRQSTPDS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3818 260 Gene3D Histone, subunit A 62 179 IPR009072 GO:0046982
Prci3g3818 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 62 205 - -
Prci3g3818 260 SUPERFAMILY Histone-fold 66 173 IPR009072 GO:0046982
Prci3g3818 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Prci3g3818 260 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Prci3g3818 260 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3818 Prci-Chr3 46816150 46818905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3818 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.484 1.07e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Prci3g3818 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3818 K08066 - gmx:100527803 426.787