Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3770 ATGTTTGCTTCAGTAGCGGATTCAGGACGTGAAAGTAGTGGAGCGTCAGGATCCAATTTGATTCCAAAGCGGTTCGTCTGGCCTTACGGGGGAAGAAGGGTGTTTCTTAGCGGCTCTTTCACAAGGTGGTCTGAACATCTACCCATGTCTCCTATGGAGGGATGTCCTACTGCATTTCAAGTTATTTGCAGCTTAATGCCGGGATATCATCAGTACAAATTTAATGTGGATGGCGAGTGGCAGCATGATGAGCATCAACCATTTGTAAGTGGGAGCTATGGAGTAGTGAATACTATTTTTTTGACTAGAGGACCAGATGCTTTGCCTTCCATCTTTGCTCCTGGGATACCCGGCAGAGCCCGCATGGAGGTTGATAATGATGTCTTTGGGCTTATGGAAACTAATTCAAGGATGTCAGAGTCTGATCTGGAGGTCTCACGCCACCGTATAGCTGTATTCTTGTCTACATATACTGCTTATGAGTTGCTTCCTGAGTCAGGCAAGGTCATCGCCTTTGATATCAACTTACCAGTTAAGCAAGCATTCCATGTTCTTTATGAACAGGGCATACCCATGGCTCCTTTATGGGATTTTCACAAGGCCCAGTTTGTTGGAGTGCTTAGTGCTATGGATTTCATTCTAATATTGAAAGAGCTGGGCAATCGGGGGTCAACTTTGACTGAAGAACAACTTGAGACTCATACTATAGCAGCATGGAAAGAGGTAAAGTCACAACAACGCAGGACAATGGACAATGGGAGATCGTATCCTCAGCACTTTGTTCATACTGGGCCTCATGAGTGTCTGAAAGATGTGGCTTTGAAAATTTTACAAAACAATGTGGCAGCGGTTCCTATTATTCACTCTACTTCACAGGATGGTTCATTTCCTCAGCTGCTACATCTTGCTTCCTTATCAGATATACTAAAATGTATTTGCAGGCACTTTAAGCATTCCTCTAGTTCCTTGCCCATTCTTCATCTACCAATTGGTTCAATACCTTTGGGTACGTGGGTGCCAAGAGTTGGGGAACCAAATAGACAGCCGCTTGCAATGCTTAGGCCGAATGCATCTCTAGCTGCCGCCCTGTCTCTGTTAATTCAAGCTGAAGTTAGTTCAATACCGATTGTGGATGATAATGATTCGTTGCTTGACATATATTCAAGGAGTGATATTACTGCATTGGCTAAAGATAGAGCTTATGCGCGGATATCCATCGATGAAATTAGTGTGCATCAGGCATTGCTTTCGGGACAAAATGCAAATTCACCTTGTGGCTTTTACAATGGTCAGAGGTGTCATATGTGTTTAAGATCTGATCCATTGCATAAAGTGATGGAGCGGTTGGCTAATCCTGGGGTTAGAAGACTTGTGATTGTGGAGCCAGGCAGCAAGCGTGTGGAGGGGATTATTTCCTTGAGGGATGTGTTCAGATTCTTGTTGGGATAG 1449 0.4417 MFASVADSGRESSGASGSNLIPKRFVWPYGGRRVFLSGSFTRWSEHLPMSPMEGCPTAFQVICSLMPGYHQYKFNVDGEWQHDEHQPFVSGSYGVVNTIFLTRGPDALPSIFAPGIPGRARMEVDNDVFGLMETNSRMSESDLEVSRHRIAVFLSTYTAYELLPESGKVIAFDINLPVKQAFHVLYEQGIPMAPLWDFHKAQFVGVLSAMDFILILKELGNRGSTLTEEQLETHTIAAWKEVKSQQRRTMDNGRSYPQHFVHTGPHECLKDVALKILQNNVAAVPIIHSTSQDGSFPQLLHLASLSDILKCICRHFKHSSSSLPILHLPIGSIPLGTWVPRVGEPNRQPLAMLRPNASLAAALSLLIQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYARISIDEISVHQALLSGQNANSPCGFYNGQRCHMCLRSDPLHKVMERLANPGVRRLVIVEPGSKRVEGIISLRDVFRFLLG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3770 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 100 IPR032640 -
Prci3g3770 482 Pfam CBS domain 434 481 IPR000644 -
Prci3g3770 482 Pfam CBS domain 348 393 IPR000644 -
Prci3g3770 482 Gene3D - 139 322 IPR046342 -
Prci3g3770 482 SMART cbs_1 168 217 IPR000644 -
Prci3g3770 482 SMART cbs_1 432 481 IPR000644 -
Prci3g3770 482 SMART cbs_1 349 397 IPR000644 -
Prci3g3770 482 SMART cbs_1 259 313 IPR000644 -
Prci3g3770 482 Gene3D Immunoglobulins 21 107 IPR013783 -
Prci3g3770 482 SUPERFAMILY CBS-domain pair 347 481 IPR046342 -
Prci3g3770 482 CDD E_set_AMPKbeta_like_N 24 100 - -
Prci3g3770 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 137 480 - -
Prci3g3770 482 SUPERFAMILY CBS-domain pair 148 318 IPR046342 -
Prci3g3770 482 FunFam Sucrose nonfermenting 4-like protein 18 102 - -
Prci3g3770 482 Gene3D - 328 482 IPR046342 -
Prci3g3770 482 SUPERFAMILY E set domains 19 101 IPR014756 -
Prci3g3770 482 ProSiteProfiles CBS domain profile. 345 403 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3770 Prci-Chr3 46600515 46609496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3770 30 89 Protein tyrosine phosphatase (PTP) family AT3G52180 36.066 3.52e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3770 - - qsa:O6P43_011107 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3770 3 46600515 46609496 Prci3g3770 3 46600515 46609496 CCT
Prci3g3770 3 46600515 46609496 Prci3g3770 3 46600515 46609496 ECH