Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3768 ATGGCGAGAAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTCCAAAGGGATCAGAACCTGCAATTGCACCGGAGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGGCCGACCACAGAGGTTCGAAAGCGTGTTTATGTTTGTCCAGAGCCTTCGTGCGTCCACCATAACCCAGCACGAGCACTGGGTGACCTTACTGGCATTAAGAAACATTTCTCAAGAAAACATGGCGAGAAGAAATGGAAGTGCGAAAAGTGCTCTAAGAGATACGCAGTCCAATCCGACTGGAAAGCCCATTCTAAGATCTGTGGCACTAGGGAATACAAATGTGACTGTGGCACCATCTTCTCCAGAAGAGATAGCTTTATCACCCATAGAGCTTTCTGTGACGCGTTGGCCGAGGAGAATAATAAAGCCAACAATGAAGGACTGCTAGGGCCAAAATTATTGGGTCCAAATTCAAACTCACAAGGTCAACATCAAATCCCAAGTCTCGTTTCTTCAATGCCAATCAACACCAACTTCAACCCACAAAACGGGACGCCCCACTTTGACCACCCCGATGAAATTAAGCATCCAGTATCTCTCCTTCATCAGGAGCTCGTAGAATTTCCAGCAAAGCCATTCAACTGCATGGCAGGAAGCGTATTCGCAAGAAGCCACAGCTCCTGTCCATCACTTCAACTGGGATCAAATAATTCCCTGAGCATGTTGGAAGAGAACGAGCACCAACCAGGCGGATCAGTCCACATGTCAGCCACGGCATTGTTGCAGAAAGCAGCTCAAATGGGAGCAACTATAAGTAACGGTGCTAACAGCTCTTGCATGGCACCCTCGTCATTTGGGAATAATAATGACCACCACCTGAGCAGTGGACAATCTTTTAATATTCCATCATCTCAGTATTTCAGCGGAAATAATAGCTTTGGGATGAACAGTGTGGATATGTTCAATGCTATATTGGACCAAAGCAAGGCGCTATCGGAGATGATAGAGCAGAATAGTCGAAGCAGTAATAACATGAACAACAACGGAGTTTTGCATGGTGCCAGTAAAGGAGGTGGAGATGTGTTGACTCTGGACTTGTTGGGGATGGGAGGAGGGGGACGCGGTGCGCACGATGCCTTTCTATGGCGCCAAGCAGGCTGA 1152 0.474 MARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANNEGLLGPKLLGPNSNSQGQHQIPSLVSSMPINTNFNPQNGTPHFDHPDEIKHPVSLLHQELVEFPAKPFNCMAGSVFARSHSSCPSLQLGSNNSLSMLEENEHQPGGSVHMSATALLQKAAQMGATISNGANSSCMAPSSFGNNNDHHLSSGQSFNIPSSQYFSGNNSFGMNSVDMFNAILDQSKALSEMIEQNSRSSNNMNNNGVLHGASKGGGDVLTLDLLGMGGGGRGAHDAFLWRQAG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3768 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Prci3g3768 383 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Prci3g3768 383 Gene3D Classic Zinc Finger 61 141 - -
Prci3g3768 383 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Prci3g3768 383 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Prci3g3768 383 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 366 IPR031140 -
Prci3g3768 383 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
Prci3g3768 383 SMART c2h2final6 6 28 IPR013087 -
Prci3g3768 383 SMART c2h2final6 82 102 IPR013087 -
Prci3g3768 383 SMART c2h2final6 47 77 IPR013087 -
Prci3g3768 383 Gene3D Classic Zinc Finger 6 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3768 Prci-Chr3 46583004 46585337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3768 1 272 IDZ Gene Family AT3G50700 53.618 1.35e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g3768 zf-C2H2 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3768 - - pcin:129304381 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2385 1 44088779 44093170 Prci3g3768 3 46583004 46585337 CCT
Prci3g3768 3 46583004 46585337 Prci3g3768 3 46583004 46585337 CCT
Prci3g3768 3 46583004 46585337 Prci3g3768 3 46583004 46585337 ECH