LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g3767	ATGTCAAACATCACGAGCCGTGACAGTGGGAGTTTCTCCCCAGAGAATACCAGAGAAGATGCAGTTATTAAACAGCATCCTCATCGTCATCACTTTCACAGTTCGGGTTCTCTTACTTCAACCACCACTAACAGCAACGGTTCCAATGCCAATTCCCAGCTGCCTCCTCCTCCTCCTCCTCCTAAGAAGAAAAGAAGCCTCCCAGGAAATCCTGATCCAAGTGCTGAAGTGATTGCTCTATCACCGAACACCCTGATGGCGAGAAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTCCAAAGGGATCAGAACCTGCAATTGCACCGGAGAGGCCATAACCTGCCATGGAAGCTTAAACAGAGGCCGACCACAGAGGTTCGAAAGCGTGTTTATGTTTGTCCAGAGCCTTCGTGCGTCCACCATAACCCAGCACGAGCACTGGGTGACCTTACTGGCATTAAGAAACATTTCTCAAGAAAACATGGCGAGAAGAAATGGAAGTGCGAAAAGTGCTCTAAGAGATACGCAGTCCAATCCGACTGGAAAGCCCATTCTAAGATCTGTGGCACTAGGGAATACAAATGTGACTGTGGCACCATCTTCTCCAGAAGAGATAGCTTTATCACCCATAGAGCTTTCTGTGACGCGTTGGCCGAGGAGAATAATAAAGCCAACAATGAAGGACTGCTAGGGCCAAAATTATTGGGTCCAAATTCAAACTCACAAGGTCAACATCAAATCCCAAGTCTCGTTTCTTCAATGCCAATCAACACCAACTTCAACCCACAAAACGGGACGCCCCACTTTGACCACCCCGATGAAATTAAGCATCCAGTATCTCTCCTTCATCAGGAGCTCGTAGAATTTCCAGCAAAGCCATTCAACTGCATGGCAGGAAGCGTATTCGCAAGAAGCCACAGCTCCTGTCCATCACTTCAACTGGGATCAAATAATTCCCTGAGCATGTTGGAAGAGAACGAGCACCAACCAGGCGGATCAGTCCACATGTCAGCCACGGCATTGTTGCAGAAAGCAGCTCAAATGGGAGCAACTATAAGTAACGGTGCTAACAGCTCTTGCATGGCACCCTCGTCATTTGGGAATAATAATGACCACCACCTGAGCAGTGGACAATCTTTTAATATTCCATCATCTCAGTATTTCAGCGGAAATAATAGCTTTGGGATGAACAGTGTGGATATGTTCAATGCTATATTGGACCAAAGCAAGGCGCTATCGGAGATGATAGAGCAGAATAGTCGAAGCAGTAATAACATGAACAACAACGGAGTTTTGCATGGTGCCAGTAAAGGAGGTGGAGATGTGTTGACTCTGGACTTGTTGGGGATGGGAGGAGGGGGACGCGGTGCGCACGATGCCTTTCTATGGCGCCAAGCAGGCTGA	1407	0.4762	MSNITSRDSGSFSPENTREDAVIKQHPHRHHFHSSGSLTSTTTNSNGSNANSQLPPPPPPPKKKRSLPGNPDPSAEVIALSPNTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRPTTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANNEGLLGPKLLGPNSNSQGQHQIPSLVSSMPINTNFNPQNGTPHFDHPDEIKHPVSLLHQELVEFPAKPFNCMAGSVFARSHSSCPSLQLGSNNSLSMLEENEHQPGGSVHMSATALLQKAAQMGATISNGANSSCMAPSSFGNNNDHHLSSGQSFNIPSSQYFSGNNSFGMNSVDMFNAILDQSKALSEMIEQNSRSSNNMNNNGVLHGASKGGGDVLTLDLLGMGGGGRGAHDAFLWRQAG	468

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci3g3767	468	MobiDBLite	consensus disorder prediction	1	74	-	-
Prci3g3767	468	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	44	451	IPR031140	-
Prci3g3767	468	MobiDBLite	consensus disorder prediction	34	51	-	-
Prci3g3767	468	FunFam	protein indeterminate-domain 5, chloroplastic-like	145	224	-	-
Prci3g3767	468	MobiDBLite	consensus disorder prediction	52	67	-	-
Prci3g3767	468	Gene3D	Classic Zinc Finger	91	133	-	-
Prci3g3767	468	SUPERFAMILY	beta-beta-alpha zinc fingers	90	187	IPR036236	-
Prci3g3767	468	FunFam	protein indeterminate-domain 12-like	70	138	-	-
Prci3g3767	468	ProSiteProfiles	Zinc finger C2H2 type domain profile.	91	113	IPR013087	-
Prci3g3767	468	Gene3D	Classic Zinc Finger	146	226	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g3767	Prci-Chr3	46583004	46586162	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g3767	48	357	IDZ Gene Family	AT3G50700	54.386	1.69e-110	332

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Prci3g3767		zf-C2H2	0.0046	CL0361

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g3767	-		-	pcin:129304381	880.167

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