Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3753 ATGGATACTAAGGACGTATCTTCCGATCAAGTCATTGCAGAAATGCTTGAAATGGGGTTTGAATATGCCAATGTTGTGGAAGCTTTGAAAGCAGCAGGTCCATCTATTCATAGTGCTCTGGAGTTTATCCTGAACAATGCTGGTAGAAATTGCGGTAGAACATCTCTTGCTAGTATTAATAACTCCAAATTTTATGCGCGCAACGAGAAGGGTTTCAGAAAAAGGGACTCGACCTCGGCCTCGTCCCATTCCTTAAGTTATGTTCGACAGTCTAGCATCCTGGACCATCTCCAATCCGCCAATGAATCCACAAAAAGCAAGACAGATATTGTGCTTGGTGTACCATCTAGTGGGTTGGAAGTTCCTCCAGACAATGTGGAAGAGCTCAAGGAGCCTTTCTCTGACATGGATGTTGATTCCAATATCTTGTCAGGAAATTGTAAGGCTGATTCCCTGGATGAGCTGGAGAGTTCATCAGATTGGGAGCAGAAAGCTAGCAATCTCTTGCAAAAGCATTTTGGCTTTTCATGCTTAAAGAGTTTTCAAAAGGAAGCCTTGACTGCTTGGGTAACTCATAAAGATTGCCTTGTCCTGGCTGCAACAGGATCTGGAAAGTCCTTGTGCTTTCAGATCCCTGCATTGCTATCTGGGAAGGTGGTGGTTGTGATTTCACCCTTAATAAGCCTGATGCATGATCAATGCTTAAAGCTATCAAGACACGGGATCAGCGCTTGCTTTCTTGGATCTGGGCAACCTGACAATACAGTTGAACATAAGGCAATGAGAGGCATGTATAGTATAATATATGTATGCCCAGAGACAGTTCTAAGATTGATTAAACCACTACAGAAGCTTGCAAAAAGCCATGGTATTGCCTTATTCGCAATTGATGAAGTACACTGCGTTTCTAAATGGGGCCATGATTTCCGGCCAGACTATAGACGACTGTCTGCATTAAGGGAAAACTTCGGTACTAGCAAACTAGAATTCCTAGAATTCGATATACCTCTGATGGCTTTGACTGCTACAGCTACCAACCTGGTTCGAGAGGATGTTTTAAAGTCGCTACACATGTCAAAAAAAACAAAGATTGTTCTCACTTCCTTTTTCCGGCCTAATTTACGGTTCATTGTAAGGCATAGTAAGACATTTTCAACTTCTTATGGGACAGATTTTCATGAGCTAGTTGAACTATATGGTAAAAAGCAAAAGTCAGATGACAAGGAAAAAGCTTTTATCTTAAAGGAATCACCAGATGTTTTCATTAACTCTGATGCTGGTAGAATCTCTGAGGTTGACTGTCTTTCCCCTTGTGATTTGGATGGCGACCAAGATGATTACAGTGAAGGAGATATTAGTGTATTGCATTCAAGATGCACTAATGGTGCTATAAATGGAAGAGAATTGTCAGTTGAATACCTGGAAAACGACATTGAAGTCTTTCAAAGTGTGGATGACTGGGATGTTGCCTGTGGTGAATTCTGTGGACAACCTCCTCAAAACGAATGGGAGTTATCTGAGATCGTTGATCCACCCAAGAAATCAGAAGGAAGACTTAGACTTATTAAAGAGCCGTTAGAGCAAGGACCAACTATCATATATGTTCCCACAAGAAAAGAAACACTGAAGATTGCAAAGTATCTATGTGAATTTGGTGTGAAGGCTGCTGCTTATAATGCATCGCTGCCCAAATCACATCTAAGAAGGGTACACAAGGATTTTCATGAAAACACATTAGAGGTTGTTGTTGCAACAGTGGCTTTTGGAATGGGGATTGACAAATTGAATGTGAGAAGAATCATCCATTATGGTTGGCCACAGAGCTTAGAGGCCTACTACCAAGAAGCTGGCCGGGCTGGACGAGATGGAAAATTAGCAGATTGCATTCTTTATGCAAACCTATCAAGGGAACCATCACTTTTGCCCAGCCATAGAAGTGAAGAGCAGTTAAAACATGCCTATGTCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATCTTGTAGAGCAGAGACGCTGGTTAAGTACTTTGGAGAGGATTTCCATAATCAAAAGTGTCTCATATGTGATGTGTGTGTCGATGGACCACCTCAAATGCAAAATCTGAGAGAGGAGGCATGTACTTTACTACAAGCTGTAGCTGAACATTGTGGACAAAGCTCTGATGTGGATGGCATATGCGATGACAATGTACATTCTGATCCCAAAAAAAGGAGAATTGAAGGGAGGCTTAGTCTTAATTTGGTTGTTAGGAAGATAAGGGAGCAATCTCAAAATTTTCTTGTCACTGATATGTTTTGGTGGAGAGGTCTTGCTCGAGTTATGGAACGACAGGGATACATCAGGGAGGGAGATGAGAAGAGCCATGTGCAGATAAGGTACCCGGAACCAACAGAATTGGGGTTGAAGTTCGTGTCAGATGGTGAACAAGCTTTCTATGCTTACCCTGAGGCTGATATGCTGCTTGCGGCGAAAAGCAGCAATAGCAAACCATACTCCTCATTCTCGGATTGGGGAAAAGGCTGGGCAGATCCTGAGATTCGTCGCCAGCGGCTCCAAAGAATGCAACTCGATGGGAAGCCAGCGGTGCTGCCAGGTCCCAGAAAATCACGCAAGAGAAATGCTGTTAGAGTGAAGCCTGATCTGAGGACTTGTCGCGGGAGACTAGCTGCAAAACTCTCAAGACATACATGA 2700 0.427 MDTKDVSSDQVIAEMLEMGFEYANVVEALKAAGPSIHSALEFILNNAGRNCGRTSLASINNSKFYARNEKGFRKRDSTSASSHSLSYVRQSSILDHLQSANESTKSKTDIVLGVPSSGLEVPPDNVEELKEPFSDMDVDSNILSGNCKADSLDELESSSDWEQKASNLLQKHFGFSCLKSFQKEALTAWVTHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLSRHGISACFLGSGQPDNTVEHKAMRGMYSIIYVCPETVLRLIKPLQKLAKSHGIALFAIDEVHCVSKWGHDFRPDYRRLSALRENFGTSKLEFLEFDIPLMALTATATNLVREDVLKSLHMSKKTKIVLTSFFRPNLRFIVRHSKTFSTSYGTDFHELVELYGKKQKSDDKEKAFILKESPDVFINSDAGRISEVDCLSPCDLDGDQDDYSEGDISVLHSRCTNGAINGRELSVEYLENDIEVFQSVDDWDVACGEFCGQPPQNEWELSEIVDPPKKSEGRLRLIKEPLEQGPTIIYVPTRKETLKIAKYLCEFGVKAAAYNASLPKSHLRRVHKDFHENTLEVVVATVAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLSREPSLLPSHRSEEQLKHAYVMLSDCFRYGMNTSSCRAETLVKYFGEDFHNQKCLICDVCVDGPPQMQNLREEACTLLQAVAEHCGQSSDVDGICDDNVHSDPKKRRIEGRLSLNLVVRKIREQSQNFLVTDMFWWRGLARVMERQGYIREGDEKSHVQIRYPEPTELGLKFVSDGEQAFYAYPEADMLLAAKSSNSKPYSSFSDWGKGWADPEIRRQRLQRMQLDGKPAVLPGPRKSRKRNAVRVKPDLRTCRGRLAAKLSRHT 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3753 899 SUPERFAMILY UBA-like 8 47 IPR009060 GO:0005515
Prci3g3753 899 CDD UBA 12 41 - -
Prci3g3753 899 Gene3D - 138 370 IPR027417 -
Prci3g3753 899 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 517 669 IPR001650 -
Prci3g3753 899 Pfam RecQ zinc-binding 644 694 IPR032284 -
Prci3g3753 899 Pfam Helicase conserved C-terminal domain 520 622 IPR001650 -
Prci3g3753 899 SMART ultradead3 174 379 IPR014001 -
Prci3g3753 899 Pfam UBA/TS-N domain 9 43 IPR015940 -
Prci3g3753 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 634 IPR027417 -
Prci3g3753 899 CDD DEXHc_RecQ 169 369 - -
Prci3g3753 899 SMART uba_6 8 45 IPR015940 -
Prci3g3753 899 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 362 IPR014001 -
Prci3g3753 899 Gene3D - 636 817 IPR036388 -
Prci3g3753 899 PANTHER DNA HELICASE RECQ FAMILY MEMBER 153 755 - -
Prci3g3753 899 FunFam ATP-dependent DNA helicase 634 812 - -
Prci3g3753 899 NCBIfam RecQ family ATP-dependent DNA helicase 168 387 IPR004589 GO:0004386|GO:0006310
Prci3g3753 899 FunFam ATP-dependent DNA helicase 505 632 - -
Prci3g3753 899 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 46 IPR015940 -
Prci3g3753 899 Pfam DEAD/DEAH box helicase 181 345 IPR011545 GO:0003676|GO:0005524
Prci3g3753 899 Gene3D - 5 47 - -
Prci3g3753 899 SMART helicmild6 542 623 IPR001650 -
Prci3g3753 899 Gene3D - 506 632 IPR027417 -
Prci3g3753 899 FunFam ATP-dependent DNA helicase 148 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3753 Prci-Chr3 46535863 46543383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3753 518 623 Eukaryotic Initiation Factors Gene Family AT5G11170 27.358 2.32e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3753 K10900 - qsa:O6P43_011098 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3753 3 46535863 46543383 Prci3g3753 3 46535863 46543383 ECH