Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3735 ATGAGTAGCCTGTCAAGTCGCACTATTTATGTTGGAAATCTTCCTGGTGATATTCGATTGAGAGAAGTTGAGGATCTTTTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAAATCCCTCCGAGACCTCCTGGTTATGCTTTTGTGAAGTTTGAGAATCGTCGTGATGCTGAAGATGCTATTCGCTATCGAGATGGTTATAAATTTGATGGTTTCCGATTGCGTGTTGAATTTGCACATGGCGGGCGGGGATATTCATCATCGGTTGACCATTATAGTAGTTATAGCAGTGGTGGTAGTAGCCGTGCCGTTTCTAAGCGTTCAGACTATCGTGTTCTGGTCACTGGATTACCCCCATCAGCTTCATGGCAAGACCTGAAGGATCACATGCGCAAAGCTGGTGATGTATGCTTCTCTGAAGTCTTTCGTGAGCGTGGTGGCATGACTGGGATCGTGGATTATACTAACTATGATGATATGAAGTATGCTATCAGGAAACTTGATGACTCAGAATTCCGAAATGCATTTTCTCGTGCATACATACGGGTGAGGGAATATGATCGACGGAGTTATTCTAGGAGTCTCAGCCGTGATTCAAGGAGAAGCTATTCTCGAAGCTATAGCCGCAGTCCTTATAGGTCACGAAGTCGAAGCCGCAGTTTGAGTCGGGATCACTGCTATAGAGGCAGCAGCAGAAGTTTGTCACCAAAGGTAAAACTTTCAAGACGTTCAATATCTCTTTCAAGATCCCACTCAAGATCCAGATCTCCAAATTCATCTCCTTCACCTTATAGAAGTTACAGTCCTCGCCATAAAAGCTTGTTGCGATCCCGTTCACCTTCGGTGAGGCCTGACCGCGGCAGCTCTGTTGACTCTGCATATCGCTATTGA 894 0.4485 MSSLSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVKFENRRDAEDAIRYRDGYKFDGFRLRVEFAHGGRGYSSSVDHYSSYSSGGSSRAVSKRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSLSRDSRRSYSRSYSRSPYRSRSRSRSLSRDHCYRGSSRSLSPKVKLSRRSISLSRSHSRSRSPNSSPSPYRSYSPRHKSLLRSRSPSVRPDRGSSVDSAYRY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3735 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Prci3g3735 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Prci3g3735 297 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 268 - -
Prci3g3735 297 MobiDBLite consensus disorder prediction 251 268 - -
Prci3g3735 297 CDD RRM2_SF2_plant_like 111 186 - -
Prci3g3735 297 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Prci3g3735 297 SUPERFAMILY RNA-binding domain, RBD 6 179 IPR035979 GO:0003676
Prci3g3735 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Prci3g3735 297 Gene3D - 2 108 IPR012677 -
Prci3g3735 297 MobiDBLite consensus disorder prediction 192 297 - -
Prci3g3735 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Prci3g3735 297 Gene3D - 110 188 IPR012677 -
Prci3g3735 297 SMART rrm1_1 112 181 IPR000504 GO:0003723
Prci3g3735 297 SMART rrm1_1 8 78 IPR000504 GO:0003723
Prci3g3735 297 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3735 Prci-Chr3 46426829 46431558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3735 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.211 4.33e-07 48.9