Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3694 ATGGATGATAATTACTGCAGGTCCGACGCTCATGGCCTCCGCCTCCAGTCGCCCGACCCGGATGAAATCGGGTCGCATCGGTTCATCAAGACCCAGATCGCCAATCATCCTCTTTATCCTACTTTACTCTCTGCCTACATAGAGTGCCAAAAGGTCGGAGCCACCCCAGAAAGATTATCCCTTCTTGAAGAAATAGGGCAGGAACAGCACCTCGTCAATACTCCTATGATAGGCGACGACCCTGAACTTGACAAGTTCATGGAGTCATACTGTGGAGTCCTGCACAGATACAAAGAGGAGCTGTCCAAGCCCTTCAACGAGGCCGCCTTGTTTCTCTGCACTATGCAATCAAAACTCAGCAATCTTTGCGACGGAACATTCACAATTTCCTCGGCTCCTTTCTCTGATGAGGCAAGTGGGAGTTCAGGGAAGGGAATAAGTTGTGGGGATGGAGAAGCAGGCGAAGGTGATGCAGGTGATCGGGAGCTAAGAGAAATGCTGGTTCGCAAGTACAGTGGCTACCTTGGAAGTTTGAGGAAGGAGCTGTTGAAGAAGAAGAAGAAGAGTAAGCTTCCCAAGGATGCGAGGACAGCTCTCCTTCAATGGTGGAACTCCCACTACAGATGGCCTTATCCTACGGAAGAGGAGAAGCTGAAGCTATCAGAAATGACGGGACTTGATCAGAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAAAGGCATTGGAAGCCATCCGAAGATATGCGTATCTCTCTCATAGTGGAAGGCGTGAGTGGTGGCCGCGTAGGTTGA 795 0.4969 MDDNYCRSDAHGLRLQSPDPDEIGSHRFIKTQIANHPLYPTLLSAYIECQKVGATPERLSLLEEIGQEQHLVNTPMIGDDPELDKFMESYCGVLHRYKEELSKPFNEAALFLCTMQSKLSNLCDGTFTISSAPFSDEASGSSGKGISCGDGEAGEGDAGDRELREMLVRKYSGYLGSLRKELLKKKKKSKLPKDARTALLQWWNSHYRWPYPTEEEKLKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRISLIVEGVSGGRVG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3694 264 CDD homeodomain 194 246 IPR001356 GO:0003677
Prci3g3694 264 SMART ELK_2 162 183 IPR005539 GO:0003677
Prci3g3694 264 SMART KNOX1_2 27 71 IPR005540 GO:0003677|GO:0005634
Prci3g3694 264 ProSitePatterns 'Homeobox' domain signature. 220 243 IPR017970 GO:0000981|GO:0006355
Prci3g3694 264 MobiDBLite consensus disorder prediction 135 159 - -
Prci3g3694 264 ProSiteProfiles ELK domain profile. 162 182 IPR005539 GO:0003677
Prci3g3694 264 SMART KNOX2_2 73 124 IPR005541 GO:0003677|GO:0005634
Prci3g3694 264 Pfam KNOX2 domain 77 123 IPR005541 GO:0003677|GO:0005634
Prci3g3694 264 Pfam ELK domain 162 183 IPR005539 GO:0003677
Prci3g3694 264 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 250 - -
Prci3g3694 264 Pfam KNOX1 domain 29 70 IPR005540 GO:0003677|GO:0005634
Prci3g3694 264 ProSiteProfiles 'Homeobox' domain profile. 182 245 IPR001356 GO:0003677
Prci3g3694 264 SMART HOX_1 184 249 IPR001356 GO:0003677
Prci3g3694 264 Pfam Homeobox KN domain 202 241 IPR008422 GO:0003677|GO:0006355
Prci3g3694 264 SUPERFAMILY Homeodomain-like 184 252 IPR009057 -
Prci3g3694 264 Gene3D - 180 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3694 Prci-Chr3 46197009 46200598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3694 21 254 Homeobox Transcription Factor Family AT1G23380 51.230 2.25e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci3g3694 KNOX2 4.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3694 - - gmx:102660463 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3694 3 46197009 46200598 Prci3g3694 3 46197009 46200598 ECH