Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3689 ATGCCATCGGCGTTGTATCATTGTATCTTACTGTACTATTTTCATCTCTTCCTCCTATTTTTCTCTGCTGAATTTCGTCACTACCTGACCATGGATTTCCAGGGATTCTTAAGTGACTTGCAGGATTGGGAACTTTCTCGGAAGGACAAAGCGCGGAAAATGACGTCACAAGCGCTGCAAAAGGAAAAAGTTGGACAATATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATGGTAGTCATACAACTGAAGATGTTCCCGATGCTGCTTCGGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTGTTGACTGCTATTCAAGAAGTATTGCCTTCTCTCCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTATATCAAACTCAGAAGATTCCAACAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCTAGAAAAGAACTTGGGAAACTTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGCGCTTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAACATCTGGAGCTCTGAGAAGCTCTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGACAAATATTGATAGGGGAACCATCCATACTGTTCCGAATGGTACTGAAAAATCTGGGGCTGCTGACGTTCTAGATCACACGAAGAGATATGATGGAATTAACAAGCAAGAAATGAAGGCATCTGTTCAACATCTTGCTTCACGTGTAGCTTCTCGGGTCATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGACCCTGCCCTGAAGGCTCGTCTTTTAAAGGCTATGTCTCCTCAAGACTTACCAAAGATATTCAAAAGTGCCTTGTCTTCTGCGATACTTATGGACATCATAAAGTGTGTGGCATCCTTTTTCACTGAAGACACGGTTCTGGCTGTCAGTTTCTTAGAGCACTTGACCAAGGTTTCAAGATTTGACATGCTCATTATGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGCTCTGGGATGATAGGTTCTGTAGCGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGACAACCTCCGATCCAAATACTGCCTTGAACATTGA 1257 0.4153 MPSALYHCILLYYFHLFLLFFSAEFRHYLTMDFQGFLSDLQDWELSRKDKARKMTSQALQKEKVGQYDFSRNKDSFDHVHGSHTTEDVPDAASEKELGNEYFKQKKFKEAVDCYSRSIAFSPTAVAYANKAMAYIKLRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESMEDAEFALRLEPENQEIKKQYADIKSLYENEILQKTSGALRSSVQGTQKVGKSETNIDRGTIHTVPNGTEKSGAADVLDHTKRYDGINKQEMKASVQHLASRVASRVMAEAAKNITPPNSAYQFEVSWRGFSGDPALKARLLKAMSPQDLPKIFKSALSSAILMDIIKCVASFFTEDTVLAVSFLEHLTKVSRFDMLIMCLTSTDKHDLRKLWDDRFCSEATPMEYAEILDNLRSKYCLEH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3689 418 Pfam Tetratricopeptide repeat 95 123 IPR001440 GO:0005515
Prci3g3689 418 ProSiteProfiles TPR repeat profile. 158 191 IPR019734 GO:0005515
Prci3g3689 418 PANTHER OS05G0129900 PROTEIN 30 258 - -
Prci3g3689 418 Gene3D Tetratricopeptide repeat domain 79 189 IPR011990 GO:0005515
Prci3g3689 418 Pfam Tetratricopeptide repeat 126 154 IPR019734 GO:0005515
Prci3g3689 418 SUPERFAMILY TPR-like 90 205 IPR011990 GO:0005515
Prci3g3689 418 SMART tpr_5 158 191 IPR019734 GO:0005515
Prci3g3689 418 SMART tpr_5 91 124 IPR019734 GO:0005515
Prci3g3689 418 SMART tpr_5 125 157 IPR019734 GO:0005515
Prci3g3689 418 Pfam Potential Monad-binding region of RPAP3 294 383 IPR025986 -
Prci3g3689 418 ProSiteProfiles TPR repeat profile. 91 124 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3689 Prci-Chr3 46162563 46168304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3689 69 195 Calmodulin-binding Proteins AT3G25230 30.070 4.06e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3689 K23002 - gmx:100784528 531.561