Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3687 ATGCCATCGGCGTTGTATCATTGTATCTTACTGTACTATTTTCATCTCTTCCTCCTATTTTTCTCTGCTGAATTTCGTCACTACCTGACCATGGATTTCCAGGGATTCTTAAGTGACTTGCAGGATTGGGAACTTTCTCGGAAGGACAAAGCGCGGAAAATGACGTCACAAGCGCTGCAAAAGGAAAAAGTTGTGGCTGTGGAGACAGCTTCAAGAGGAGAAACTTTTTCATTTGATTTTACAAAAAGTATTTCAGGACAATATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATGGTAGTCATACAACTGAAGATGTTCCCGATGCTGCTTCGGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTGTTGACTGCTATTCAAGAAGTATTGCCTTCTCTCCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTATATCAAACTCAGAAGATTCCAACAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCTAGAAAAGAACTTGGGAAACTTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGCGCTTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAACATCTGGAGCTCTGAGAAGCTCTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGACAAATATTGATAGGGGAACCATCCATACTGTTCCGAATGGTACTGAAAAATCTGGGGCTGCTGACGTTCTAGATCACACGAAGAGATATGATGGAATTAACAAGCAAGAAATGAAGGCATCTGTTCAACATCTTGCTTCACGTGTAGCTTCTCGGGTCATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGACCCTGCCCTGAAGGCTCGTCTTTTAAAGGCTATGTCTCCTCAAGACTTACCAAAGATATTCAAAAGTGCCTTGTCTTCTGCGATACTTATGGACATCATAAAGTGTGTGGCATCCTTTTTCACTGAAGACACGGTTCTGGCTGTCAGTTTCTTAGAGCACTTGACCAAGGTTTCAAGATTTGACATGCTCATTATGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGCTCTGGGATGATAGGTTCTGTAGCGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGACAACCTCCGATCCAAATACTGCCTTGAACATTGA 1320 0.4121 MPSALYHCILLYYFHLFLLFFSAEFRHYLTMDFQGFLSDLQDWELSRKDKARKMTSQALQKEKVVAVETASRGETFSFDFTKSISGQYDFSRNKDSFDHVHGSHTTEDVPDAASEKELGNEYFKQKKFKEAVDCYSRSIAFSPTAVAYANKAMAYIKLRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESMEDAEFALRLEPENQEIKKQYADIKSLYENEILQKTSGALRSSVQGTQKVGKSETNIDRGTIHTVPNGTEKSGAADVLDHTKRYDGINKQEMKASVQHLASRVASRVMAEAAKNITPPNSAYQFEVSWRGFSGDPALKARLLKAMSPQDLPKIFKSALSSAILMDIIKCVASFFTEDTVLAVSFLEHLTKVSRFDMLIMCLTSTDKHDLRKLWDDRFCSEATPMEYAEILDNLRSKYCLEH 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3687 439 SMART tpr_5 179 212 IPR019734 GO:0005515
Prci3g3687 439 SMART tpr_5 112 145 IPR019734 GO:0005515
Prci3g3687 439 SMART tpr_5 146 178 IPR019734 GO:0005515
Prci3g3687 439 Pfam Potential Monad-binding region of RPAP3 315 404 IPR025986 -
Prci3g3687 439 SUPERFAMILY TPR-like 111 226 IPR011990 GO:0005515
Prci3g3687 439 Gene3D Tetratricopeptide repeat domain 100 210 IPR011990 GO:0005515
Prci3g3687 439 Pfam Tetratricopeptide repeat 147 175 IPR019734 GO:0005515
Prci3g3687 439 ProSiteProfiles TPR repeat profile. 112 145 IPR019734 GO:0005515
Prci3g3687 439 Pfam Tetratricopeptide repeat 116 144 IPR001440 GO:0005515
Prci3g3687 439 PANTHER OS05G0129900 PROTEIN 30 279 - -
Prci3g3687 439 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3687 Prci-Chr3 46162560 46168304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3687 90 216 Calmodulin-binding Proteins AT3G25230 30.070 4.75e-10 59.7