Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3686 ATGGATTTCCAGGGATTCTTAAGTGACTTGCAGGATTGGGAACTTTCTCGGAAGGACAAAGCGCGGAAAATGACGTCACAAGCGCTGCAAAAGGAAAAAGGTTCATCTTCTCAAAATACTGGATCAGTGGCTGTGGAGACAGCTTCAAGAGGAGAAACTTTTTCATTTGATTTTACAAAAAGTATTTCAGGACAATATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATGGTAGTCATACAACTGAAGATGTTCCCGATGCTGCTTCGGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTGTTGACTGCTATTCAAGAAGTATTGCCTTCTCTCCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTATATCAAACTCAGAAGATTCCAACAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCTAGAAAAGAACTTGGGAAACTTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGCGCTTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAACATCTGGAGCTCTGAGAAGCTCTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGACAAATATTGATAGGGGAACCATCCATACTGTTCCGAATGGTACTGAAAAATCTGGGGCTGCTGACGTTCTAGATCACACGAAGAGATATGATGGAATTAACAAGCAAGAAATGAAGGCATCTGTTCAACATCTTGCTTCACGTGTAGCTTCTCGGGTCATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGACCCTGCCCTGAAGGCTCGTCTTTTAAAGGCTATGTCTCCTCAAGACTTACCAAAGATATTCAAAAGTGCCTTGTCTTCTGCGATACTTATGGACATCATAAAGTGTGTGGCATCCTTTTTCACTGAAGACACGGTTCTGGCTGTCAGTTTCTTAGAGCACTTGACCAAGGTTTCAAGATTTGACATGCTCATTATGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGCTCTGGGATGATAGGTTCTGTAGCGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGACAACCTCCGATCCAAATACTGCCTTGAACATTGA 1254 0.4123 MDFQGFLSDLQDWELSRKDKARKMTSQALQKEKGSSSQNTGSVAVETASRGETFSFDFTKSISGQYDFSRNKDSFDHVHGSHTTEDVPDAASEKELGNEYFKQKKFKEAVDCYSRSIAFSPTAVAYANKAMAYIKLRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESMEDAEFALRLEPENQEIKKQYADIKSLYENEILQKTSGALRSSVQGTQKVGKSETNIDRGTIHTVPNGTEKSGAADVLDHTKRYDGINKQEMKASVQHLASRVASRVMAEAAKNITPPNSAYQFEVSWRGFSGDPALKARLLKAMSPQDLPKIFKSALSSAILMDIIKCVASFFTEDTVLAVSFLEHLTKVSRFDMLIMCLTSTDKHDLRKLWDDRFCSEATPMEYAEILDNLRSKYCLEH 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3686 417 SUPERFAMILY TPR-like 89 204 IPR011990 GO:0005515
Prci3g3686 417 SMART tpr_5 157 190 IPR019734 GO:0005515
Prci3g3686 417 SMART tpr_5 90 123 IPR019734 GO:0005515
Prci3g3686 417 SMART tpr_5 124 156 IPR019734 GO:0005515
Prci3g3686 417 PANTHER OS05G0129900 PROTEIN 1 257 - -
Prci3g3686 417 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Prci3g3686 417 ProSiteProfiles TPR repeat profile. 90 123 IPR019734 GO:0005515
Prci3g3686 417 MobiDBLite consensus disorder prediction 21 44 - -
Prci3g3686 417 MobiDBLite consensus disorder prediction 28 44 - -
Prci3g3686 417 Pfam Potential Monad-binding region of RPAP3 293 382 IPR025986 -
Prci3g3686 417 Pfam Tetratricopeptide repeat 94 122 IPR001440 GO:0005515
Prci3g3686 417 Pfam Tetratricopeptide repeat 125 153 IPR019734 GO:0005515
Prci3g3686 417 Gene3D Tetratricopeptide repeat domain 78 188 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3686 Prci-Chr3 46162383 46168304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3686 68 194 Calmodulin-binding Proteins AT3G25230 30.070 2.92e-10 60.1