Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3685 ATGGATTTCCAGGGATTCTTAAGTGACTTGCAGGATTGGGAACTTTCTCGGAAGGACAAAGCGCGGAAAATGACGTCACAAGCGCTGCAAAAGGAAAAAGTTGGACAATATGATTTCTCAAGAAATAAAGATTCTTTTGATCATGTCCATGGTAGTCATACAACTGAAGATGTTCCCGATGCTGCTTCGGAAAAAGAACTGGGTAATGAATACTTCAAGCAGAAGAAGTTTAAGGAAGCTGTTGACTGCTATTCAAGAAGTATTGCCTTCTCTCCGACAGCTGTGGCATATGCAAATAAAGCAATGGCCTATATCAAACTCAGAAGATTCCAACAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTAGATGATCGTTACATAAAAGCATACTCACGTCGAGCAACAGCTAGAAAAGAACTTGGGAAACTTAAAGAATCAATGGAGGATGCTGAATTTGCTTTGCGCTTGGAACCTGAAAATCAAGAAATCAAGAAACAGTATGCTGATATCAAATCTTTGTATGAGAATGAAATTCTTCAGAAAACATCTGGAGCTCTGAGAAGCTCTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGACAAATATTGATAGGGGAACCATCCATACTGTTCCGAATGGTACTGAAAAATCTGGGGCTGCTGACGTTCTAGATCACACGAAGAGATATGATGGAATTAACAAGCAAGAAATGAAGGCATCTGTTCAACATCTTGCTTCACGTGTAGCTTCTCGGGTCATGGCTGAAGCTGCAAAAAATATAACACCGCCAAATTCAGCTTATCAGTTTGAGGTCTCATGGAGAGGGTTTTCAGGTGACCCTGCCCTGAAGGCTCGTCTTTTAAAGGCTATGTCTCCTCAAGACTTACCAAAGATATTCAAAAGTGCCTTGTCTTCTGCGATACTTATGGACATCATAAAGTGTGTGGCATCCTTTTTCACTGAAGACACGGTTCTGGCTGTCAGTTTCTTAGAGCACTTGACCAAGGTTTCAAGATTTGACATGCTCATTATGTGTCTTACATCAACAGATAAGCATGATCTGCGCAAGCTCTGGGATGATAGGTTCTGTAGCGAGGCAACTCCAATGGAGTATGCAGAGATTCTTGACAACCTCCGATCCAAATACTGCCTTGAACATTGA 1167 0.4165 MDFQGFLSDLQDWELSRKDKARKMTSQALQKEKVGQYDFSRNKDSFDHVHGSHTTEDVPDAASEKELGNEYFKQKKFKEAVDCYSRSIAFSPTAVAYANKAMAYIKLRRFQQAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESMEDAEFALRLEPENQEIKKQYADIKSLYENEILQKTSGALRSSVQGTQKVGKSETNIDRGTIHTVPNGTEKSGAADVLDHTKRYDGINKQEMKASVQHLASRVASRVMAEAAKNITPPNSAYQFEVSWRGFSGDPALKARLLKAMSPQDLPKIFKSALSSAILMDIIKCVASFFTEDTVLAVSFLEHLTKVSRFDMLIMCLTSTDKHDLRKLWDDRFCSEATPMEYAEILDNLRSKYCLEH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3685 388 Pfam Tetratricopeptide repeat 65 93 IPR001440 GO:0005515
Prci3g3685 388 SMART tpr_5 95 127 IPR019734 GO:0005515
Prci3g3685 388 SMART tpr_5 128 161 IPR019734 GO:0005515
Prci3g3685 388 SMART tpr_5 61 94 IPR019734 GO:0005515
Prci3g3685 388 SUPERFAMILY TPR-like 60 175 IPR011990 GO:0005515
Prci3g3685 388 Gene3D Tetratricopeptide repeat domain 49 159 IPR011990 GO:0005515
Prci3g3685 388 Pfam Tetratricopeptide repeat 96 124 IPR019734 GO:0005515
Prci3g3685 388 Pfam Potential Monad-binding region of RPAP3 264 353 IPR025986 -
Prci3g3685 388 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Prci3g3685 388 ProSiteProfiles TPR repeat profile. 61 94 IPR019734 GO:0005515
Prci3g3685 388 PANTHER OS05G0129900 PROTEIN 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3685 Prci-Chr3 46162383 46168304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3685 39 165 Calmodulin-binding Proteins AT3G25230 30.070 2.74e-10 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3685 3 46162383 46168304 Prci3g3685 3 46162383 46168304 ECH