Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3680 ATGCGAGGGTACGCGAGAAGGAAGCCTAACGATAACATCAAGGCCCCTCGAATCGATCCCCCTCATTCTCCAAAACAGCGCCCGTCTAGTGATTCGGACTATTTTTACCAAAAACTCAACCAGGTCTGGGAGTCCTACGGACTCGGTCTAATTATTGATGCCCGAGAAACTTCGCTGGACATGTTCCTCTTTTACTCGGAGGTGACCAGAAGAGGAGGATATCATCAGGTCAGCAGAGACAGGAAATGGGATGAACTTGTTTCTGCCTTAAAGTTGCAAGGCAGTAACGCAAAGTTACCTGTTCAACTTGAAAAGTGCTACGCTCTACTTCTTTACCAGTTTGAGCGACTCTACCACTACAGGGATCCAGCACAGAAAGCTGCTACTAGCCCCACCTCAGGTCTTGTCACAGATGGCATAAGCCCAGAGAGGAAGCGTAAATATGAGGTTAGTTTATTTGAATTAATGGATAATGAAGACGGTGAGGTGGAGACAAAGATGTGCAAGGAAATGACAGGGAGCGAGCTTGCAGAACAGCAAGTATTGGTACAGGCAACTCAAGAGGACAAGAAAGTAAAGAAACGTCGAGGTGCTCCGCAGGGATGTAAAACTGCATATCAGATATTCATCAAGCAGGAATGCGCTCGGCTGAAGACTTGTAATGAGGCATCTACTCGCTCAAATTTTCTACGCATGGCCATTGATGCGTGGAACAATATGACTGAGATTGAGAGACAGCCGTTTGTGGAAGAAAGCAAGAAGGAAAAGGAAAGGCTCATGGAAGCAACGAAGACTGGAGATCAGAATGGAGATCAGAATGTTAAAGCTGGCATTGATTTTGGTGACTATCGTGTGACTCTGCAACCTGATGCAGAGAACTGCGGCGATGGCTTAGAGCTTGTAATGAGCGAAGAAGGACCCAAAGAGCCATTAACTATTGACATGGGGCATATACCAAGTGAAGCATTAGAGTAA 975 0.4615 MRGYARRKPNDNIKAPRIDPPHSPKQRPSSDSDYFYQKLNQVWESYGLGLIIDARETSLDMFLFYSEVTRRGGYHQVSRDRKWDELVSALKLQGSNAKLPVQLEKCYALLLYQFERLYHYRDPAQKAATSPTSGLVTDGISPERKRKYEVSLFELMDNEDGEVETKMCKEMTGSELAEQQVLVQATQEDKKVKKRRGAPQGCKTAYQIFIKQECARLKTCNEASTRSNFLRMAIDAWNNMTEIERQPFVEESKKEKERLMEATKTGDQNGDQNVKAGIDFGDYRVTLQPDAENCGDGLELVMSEEGPKEPLTIDMGHIPSEALE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3680 324 Gene3D - 14 133 IPR036431 GO:0003677
Prci3g3680 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 154 260 - -
Prci3g3680 324 SMART ARID_2 26 115 - -
Prci3g3680 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 199 267 IPR009071 -
Prci3g3680 324 SUPERFAMILY HMG-box 186 262 IPR036910 -
Prci3g3680 324 SUPERFAMILY ARID-like 31 124 IPR036431 GO:0003677
Prci3g3680 324 CDD HMG-box_SF 203 258 - -
Prci3g3680 324 Pfam HMG-box domain 199 260 IPR009071 -
Prci3g3680 324 Pfam ARID/BRIGHT DNA binding domain 33 115 IPR001606 GO:0003677
Prci3g3680 324 SMART bright_3 30 120 IPR001606 GO:0003677
Prci3g3680 324 MobiDBLite consensus disorder prediction 1 26 - -
Prci3g3680 324 MobiDBLite consensus disorder prediction 1 31 - -
Prci3g3680 324 Gene3D High mobility group box domain 183 276 IPR036910 -
Prci3g3680 324 MobiDBLite consensus disorder prediction 304 324 - -
Prci3g3680 324 ProSiteProfiles ARID domain profile. 29 119 IPR001606 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3680 58 258 ARID Transcription Factor Family AT1G55650 26.047 1.18e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci3g3680 ARID 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3680 - - pcin:129307373 659.062