Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3650 ATGTTTACCCGGACAGTTAGACTTCTAGAAGCCGGAATGGAACCAGTATATGTTTTTGATGGGAAGCCGCCTGATCTGAAGCAGCAAGAGCTGGCTAAACGTTACTCAAAGAGAGCTGAAGCTTATGAGGATTTGTCAGAGGCCATAGAGTCTGGCAACAAGGACGACATTGAAAAATTCAGTAAAAGGACAGTCAAGGTGACAAAGCAGCATACTGAAGGGTGCAAAAGACTTTTATCACTCATGGGAGTGCCTGTTATTCAGGCGCCATCAGAAGCTGAAGCACAGTGTGCTGCACTTTGCAAATCTGGAAAGGTTTATGCAGTGGCTTCTGAAGACATGGACTCGTTAACATTTGGGGCTTCTAGATTTCTTCGCCATTTAATGGGCCCTAGCTCAAAGAAAGTTCCAGTTATGGAATTTGAAGTTGCCAAGATATTGGAGGAGCTAAATCTGACCATGGATCAGTTTATTGACTTGTGTATTCTTTCTGGGTGTGATTATTGTGGAAGCATTCGAGGTATCGGTGGTAAGACTGCTTTGAAGCTCATTCACCAACATAGCTCTATAGAGAACATATTGGAGAACATAAATAAAGAGAGGTACCAGATACCAGATGATTGGCCATTTCTGGAGGTTAGGCAGCTTTTTAAGGAGCCAACAGTGTTAGCTGAAGAAAAGCAACTAGATCTTAAGTGGACTGCTCCCGATGAAGAAGAGTTAATGGCATTTCTGATAAATGAGAATGGATTCAACAGAGATAGGGTGACAAAGGCAATAGAAACAATTAAAGCTGCAAAGAACAAGTCATTACAAGGCCAATCGGAATCTGTTCTTAAGCCAGTGGCAAATTACTTTGCACCTATTAAACGAAAGGGGAGCAAATGCACGATTAGATCCTTTAAACCAGCAGCCGAGCGTAAGATGTTATCCCCACAACTTAGTAAATGGTGGAAGCCCATGCTTATCGGCAACCTGAGCATTGCTAACACATCTTTCAAGCTACCTGTCTTTATTAAACACCAGACAGTGCTGCTAAACAGACTGCCAAAAAGACAGGCCTGTGGTGTTGAGAAAGAGCTAGCTTTGTGTTGTGAAAAATCTGATCGGGGTATTTGCATGTTGATCGTGGCAAATCTGTGCGTCATTCAGCTCTGA 1158 0.4275 MFTRTVRLLEAGMEPVYVFDGKPPDLKQQELAKRYSKRAEAYEDLSEAIESGNKDDIEKFSKRTVKVTKQHTEGCKRLLSLMGVPVIQAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGASRFLRHLMGPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCGSIRGIGGKTALKLIHQHSSIENILENINKERYQIPDDWPFLEVRQLFKEPTVLAEEKQLDLKWTAPDEEELMAFLINENGFNRDRVTKAIETIKAAKNKSLQGQSESVLKPVANYFAPIKRKGSKCTIRSFKPAAERKMLSPQLSKWWKPMLIGNLSIANTSFKLPVFIKHQTVLLNRLPKRQACGVEKELALCCEKSDRGICMLIVANLCVIQL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3650 385 Gene3D - 156 219 - -
Prci3g3650 385 FunFam Flap endonuclease 1 1 154 - -
Prci3g3650 385 FunFam Flap endonuclease 1 152 219 - -
Prci3g3650 385 CDD PIN_FEN1 1 265 - -
Prci3g3650 385 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 152 282 IPR036279 -
Prci3g3650 385 Gene3D - 1 155 - -
Prci3g3650 385 SMART xpgineu 80 152 IPR006086 GO:0004518
Prci3g3650 385 Hamap Flap endonuclease 1 [fen]. 1 280 IPR023426 GO:0016788
Prci3g3650 385 CDD H3TH_FEN1-Euk 155 223 - -
Prci3g3650 385 Pfam XPG I-region 83 167 IPR006086 GO:0004518
Prci3g3650 385 Pfam XPG N-terminal domain 1 41 IPR006085 GO:0004518
Prci3g3650 385 ProSitePatterns XPG protein signature 2. 83 97 IPR019974 GO:0016788
Prci3g3650 385 SMART HhH_4 154 187 IPR008918 GO:0003677|GO:0003824
Prci3g3650 385 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 15 34 IPR006084 -
Prci3g3650 385 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 100 120 IPR006084 -
Prci3g3650 385 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 79 96 IPR006084 -
Prci3g3650 385 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 157 172 IPR006084 -
Prci3g3650 385 SUPERFAMILY PIN domain-like 1 167 IPR029060 -
Prci3g3650 385 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 301 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3650 Prci-Chr3 45907517 45912866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3650 1 318 Core DNA Replication Machinery Family AT5G26680 74.843 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3650 K04799 - cave:132187694 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3650 3 45907517 45912866 Prci3g3650 3 45907517 45912866 ECH