Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3633 ATGGGGAGGCACTCTTGCTGCTACAAGCAGAAGCTTCGGAAGGGTCTATGGTCCCCCGAGGAGGATGAAAAACTTTTGAGACATATTACTAAGTATGGCCATGGCTGCTGGAGCTCTGTTCCTAAGCAAGCCGGCCTGCAGAGGTGTGGTAAGAGCTGTAGGCTGAGGTGGATCAATTACCTGAGGCCTGATTTGAAGAGAGGAACATTCTCACAAGAAGAAGAAAGCCTTATAATTGAACTCCACGCAGTACTGGGAAATAGATGGTCTCAAATTGCGGCACAATTGCCCGGGAGAACTGACAATGAAATCAAGAATTTGTGGAATTCTAGTTTAAAGAAGAAACTGAGGCAAAGAGGCATCGACCCTGTTACCCACAAACCACTCTCTGAGGTTCAAAACGGAGACGACAGAGACAGAGAACTCAATGAATCGAAACTTCTCAAATCAGAGAGCCCCGATTCAGATGGCACAAAAGCCTACACGCCCGTCATGGAAGGCTGTGCCGGCTTCAAGTATAACAACAGCACGAGTGACACCAATTTGCTAACCAACTGTGGCAGCAAAGAATTGCTCCCGGACGGGTTTACGGCGAGCTACACCACTTCGGGCCTGATGGGGAATTTGAATTCCGCACTTCAGGTGAATTATGCATCCTCTGGTGATGCCTTCCCAGCCAATTCAAACCCTTCTCAGTGGTTCGCCCAAACAGGAGGACCAAGATTCAATATGAATTCTGAATTTGCTTCCAATTCCATGTCTACTGTTCTCGCGCCTCCACCCGCTTCATATCTCCCAACGGTTGGTGTTCCTTGCGATGGTATCGGTGCAGCCTCTTACACTACTGAGCATGCATCCCCGTCTCATTTCTGGGCACTGATGACAGATTCTGCAAAAGAGACCCAAATGCAAGTGCTGGAGAACCAGACAGGGGAAGCCAAGTGGGGTGATTACGTTCAATACCCGATCGTAATGCTGCCCGTGACTCATGTGGTATCTGATAATTTAGCAGCGATGTTGCCCCATAACAAACGGCAAGAAGAACCCTCGCAGACTTGTAATATGTTTTCCAAGGACATCCAGAAGCTCACGGCTGCCTTTGGACATATGTAG 1113 0.4852 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEESLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQRGIDPVTHKPLSEVQNGDDRDRELNESKLLKSESPDSDGTKAYTPVMEGCAGFKYNNSTSDTNLLTNCGSKELLPDGFTASYTTSGLMGNLNSALQVNYASSGDAFPANSNPSQWFAQTGGPRFNMNSEFASNSMSTVLAPPPASYLPTVGVPCDGIGAASYTTEHASPSHFWALMTDSAKETQMQVLENQTGEAKWGDYVQYPIVMLPVTHVVSDNLAAMLPHNKRQEEPSQTCNMFSKDIQKLTAAFGHM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3633 370 MobiDBLite consensus disorder prediction 131 153 - -
Prci3g3633 370 FunFam MYB transcription factor 68 140 - -
Prci3g3633 370 CDD SANT 69 112 IPR001005 -
Prci3g3633 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci3g3633 370 SMART sant 13 63 IPR001005 -
Prci3g3633 370 SMART sant 66 114 IPR001005 -
Prci3g3633 370 PANTHER MYB DOMAIN PROTEIN 55 1 247 - -
Prci3g3633 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Prci3g3633 370 CDD SANT 17 61 IPR001005 -
Prci3g3633 370 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci3g3633 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci3g3633 370 FunFam Myb transcription factor 11 67 - -
Prci3g3633 370 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Prci3g3633 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci3g3633 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Prci3g3633 370 MobiDBLite consensus disorder prediction 119 160 - -
Prci3g3633 370 Gene3D - 11 67 - -
Prci3g3633 370 Gene3D - 68 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3633 Prci-Chr3 45746344 45748188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3633 1 146 MYB Transcription Factor Family AT4G01680 86.395 1.50e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g3633 Myb_DNA-binding 1.7e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4186 1 56729890 56731925 Prci3g3633 3 45746344 45748188 CCT