Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3629 ATGGCAGAGAAGCAGAATGAGTCAATCAGCCCAGGAATCACAGGCAGCTCCTCCCATGTTGCTTCCGTGTACGGCAATGATTTTGTTGAGCTGGTTTGGCAAAGTGGCCAAATTCTGGTGCAAGGAGGGTCATCGAGCAGAACACTGAAGAGACCCTCGTGCATTGGCTATTCCATAAATCCCTCCCATGAAGCTTACGACGAGGATACCTGCGTCACAAAACGTGCAAGGTTAAACACTTTGTACACGCTTTTGGACTCTTCACATCAAAATTCCCGACAAACTAATGGCCCGTGTTCATATCCGTTTGATTCGAAATGCACCGAAAGCAATAATTTTGGTAATAAACCTGGGGATGAGTTATCCACATTAATAGTAGAAAGAGAATCTATGTCCAAGCCCACCAGGGGGAATACTCAGTTATGCTCGACTTCCTTACAGACCCAGAAGCATGACTCGGGATATGATCAAAGAGTTGGAAAGATTAATTTCTCCAACTTCCTAAGACCTGCATTGTTTTTCAAATCTACTTGTCAGGGAAACAGTGCAGCTCGGCACCCAAACACTGCCGTTTCGGCTAGAGCGGAGGAGATCAAAGCAACTGATGGTGGTAGTATCAAAGCTCTTGATCATTCTGTTGTGATTGACTCGGCTAAGGGATCACATATTCTCAACGGAGTTCACCCTGGCCGGACAGCTTTTACTTCTAATAAAGCAAACTCAACAACACCCTTTGATGCAAAAAAGGATCAGGAACCACTCCCTGATGAGCAATCCGAAGCTGTTGGATACGATAGGGCCCTGAAGGGTCAGGGATCACACGGTCAATATCATCAAACTCACAGTAGAAAAATAAAAACAGCTGCTGAGTTTTCTAGTGCACCCTTGGTAGCATCTTCCTCTTTATGCTCGCTTGGAGCCTCGAACGACCCTACCCTACATAGTAGGAAACACGAGGACACCGACGACTCAACCTATACAAGTGATAATGATGAAGAAACAGAAGACACGGTAAAGGAAACGTCGGCTCGAGATGGTTCAAGAGGCAAGAGAATCAGGAACACGCAGATGCATAATTTATCGGAGAGGAAGCGAAGAGATAAGATTAACAAGAAGATGCGTGCATTAAAAGAGCTTATACCTCATTGCAACAAGATGGACAAGGCTTCCATGCTGGATGATGCTATCGATTATCTGAAGACCCTCAAGCTTCAGTTGCAGGTATTGTCAATGGGAAGTGGGGTTTGTATGCCTATGATGATGTCGATGTTAACAGCAGGAGGTTGTGGGCATCAGTTAGGTATGAGGCCAGGCATAGGCATGCCTTGCAGCCTCCCTCCTCATCAGTTTGGTAGTGGCAGTATTCTTCCGCAGGTCCCCCCTCACCCTCACGCCATCGCTAACAATAGTCTTCATCAAATGCTTCCTGGTTTCCCCAATCAAATGCTTCCTAATATTCAATTCCCAATGACCCAATCACCTTTCATTTCTATGCCTCCCAAGCCTATGCAACCCTACCTCTCTTCCCACCTAACCACTCTTGATCACGACTCTGACCTTAATGCACAGTTCGTTTCTCCTATGCCAAAATCTACTCAGGGATCAAAGTGA 1611 0.4587 MAEKQNESISPGITGSSSHVASVYGNDFVELVWQSGQILVQGGSSSRTLKRPSCIGYSINPSHEAYDEDTCVTKRARLNTLYTLLDSSHQNSRQTNGPCSYPFDSKCTESNNFGNKPGDELSTLIVERESMSKPTRGNTQLCSTSLQTQKHDSGYDQRVGKINFSNFLRPALFFKSTCQGNSAARHPNTAVSARAEEIKATDGGSIKALDHSVVIDSAKGSHILNGVHPGRTAFTSNKANSTTPFDAKKDQEPLPDEQSEAVGYDRALKGQGSHGQYHQTHSRKIKTAAEFSSAPLVASSSLCSLGASNDPTLHSRKHEDTDDSTYTSDNDEETEDTVKETSARDGSRGKRIRNTQMHNLSERKRRDKINKKMRALKELIPHCNKMDKASMLDDAIDYLKTLKLQLQVLSMGSGVCMPMMMSMLTAGGCGHQLGMRPGIGMPCSLPPHQFGSGSILPQVPPHPHAIANNSLHQMLPGFPNQMLPNIQFPMTQSPFISMPPKPMQPYLSSHLTTLDHDSDLNAQFVSPMPKSTQGSK 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3629 536 Gene3D - 349 410 IPR036638 GO:0046983
Prci3g3629 536 MobiDBLite consensus disorder prediction 337 367 - -
Prci3g3629 536 CDD bHLH_AtPIF_like 353 414 IPR047265 -
Prci3g3629 536 SMART finulus 359 408 IPR011598 GO:0046983
Prci3g3629 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 414 IPR036638 GO:0046983
Prci3g3629 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Prci3g3629 536 MobiDBLite consensus disorder prediction 309 367 - -
Prci3g3629 536 MobiDBLite consensus disorder prediction 224 260 - -
Prci3g3629 536 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Prci3g3629 536 PANTHER TRANSCRIPTION FACTOR PIF3 1 90 IPR044273 GO:0003700|GO:0006355
Prci3g3629 536 MobiDBLite consensus disorder prediction 230 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3629 Prci-Chr3 45705895 45713241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3629 162 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.455 3.16e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g3629 HLH 8.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3629 K12126 - pcin:129304463 1073.54