LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g3628	ATGGGCAAAACCTCTAGTTCATCCTCGTCATCGATTAGCAGTAACAGCAAGGACCCAGCTTTCTCAACCGCATCTTCTCTCAAACACCTTCCTACAGATCTAAGTCTTGGACTCAGCATTTCACCGATCCCACATCTCTACCCTTGTATTTCAAGGGGGGCACCTTCGGATAATAGGCCGCTGGTAAGCAGTTCACGTGCGGCTGAAGTAAATGATTGCAGCCTCTTTGTAAAGGTGTACATGGAAGGGATTCTAATAGGCAGAAAACTAGATCTATTAGCTCAAGATGGCTACCACGAGTTAATAAAGACGCTCGAGCACATGTTTGACACCACTATTGTCTTGGGCTCTGAGATGGAGGAAGTACTTCAACCTGCAGAGAGACGATGGCATGTGCTAACCTATGAAGACGACGAAGGGGACTTGATCATGGTTGGAGATATCCCTTGGGAGATGTTCTTATCCACCGTAAAGAGATTGAGGATCACCAGAATAGATGCATTCGGGTGTTAA	513	0.462	MGKTSSSSSSSISSNSKDPAFSTASSLKHLPTDLSLGLSISPIPHLYPCISRGAPSDNRPLVSSSRAAEVNDCSLFVKVYMEGILIGRKLDLLAQDGYHELIKTLEHMFDTTIVLGSEMEEVLQPAERRWHVLTYEDDEGDLIMVGDIPWEMFLSTVKRLRITRIDAFGC	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g3628	170	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	65	164	IPR003311	GO:0005634\|GO:0006355
	Prci3g3628	170	ProSiteProfiles	PB1 domain profile.	74	167	IPR000270	GO:0005515
	Prci3g3628	170	Pfam	AUX/IAA family	69	164	IPR033389	-
	Prci3g3628	170	Gene3D	-	68	168	-	-
	Prci3g3628	170	SUPERFAMILY	CAD & PB1 domains	64	164	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g3628	Prci-Chr3	45694081	45695180	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g3628	65	162	B3 DNA Binding Superfamily	AT1G59750	36.735	5.48e-15	69.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX or IAA	Prci3g3628		AUX_IAA	3.2e-29	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g3628	K14484		-	gmx:100818376	188.734

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci1g4183	1	56693098	56695196	Prci3g3628	3	45694081	45695180	CCT
	Prci3g3628	3	45694081	45695180	Prci3g3628	3	45694081	45695180	ECH