Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3587 ATGGAAATGAAGGTGGAAGGAGGGAGTAAGAGGAAGGCGCATCAGAGTGAAGACGAGACGGGCATAAGGAAAGGCCCATGGACTGTGGAAGAGGACACCATTCTGGTCAATTATATCGCCATCCACGGCGAAGGTCGCTGGAATTCCGTCGCCCGCTTTGCCGGTTTGAAGAGAACGGGCAAAAGTTGCAGGTTAAGGTGGCTGAACTACTTGCGTCCCGATGTTCGGCGCGGAAATATCACGCTGCAGGAACAGATAGTGATTCTTGATCTGCACTCTCGGTGGGGAAATAGGTGGTCAAAAATAGCGCAGCATTTGCCTGGAAGAACGGACAACGAGATTAAGAATTATTGGAGAACGAGAGTGATGAAGCAGGCGAAGCAGCTCAAGTGTGACGTCAACAGCAAGCAGTTCAGAGACACCCTGCGTTACGTGTGGATGCCCCGCTTGCTGGAGCGGATACGGGCGGCAACGTCAGAATACGACCCGAGCTGCCAGCCCGTTCCCGTCACCCTGAATCACTCCTCCGTCACGCCTCTCGATATCCAGTTTCACCAAGCCCCCTCTATTCCGTGGCAGGCTCAACATGTTTCGCATGGCTCCCAAAACGGGTCCGACGTTTGCCCGCGCGTTGCATCGGAGCAGGGAAATAATGGCCTGGGTGGTGGCTGTGGCGGTGGCGGTGGGGATTGGGCTGAAACACTGTGGAGCGACGACAATATTTGGTTTTTGCAGCAACAACTTTTCGAAGATGTGTAG 759 0.5415 MEMKVEGGSKRKAHQSEDETGIRKGPWTVEEDTILVNYIAIHGEGRWNSVARFAGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQIVILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDTLRYVWMPRLLERIRAATSEYDPSCQPVPVTLNHSSVTPLDIQFHQAPSIPWQAQHVSHGSQNGSDVCPRVASEQGNNGLGGGCGGGGGDWAETLWSDDNIWFLQQQLFEDV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3587 252 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Prci3g3587 252 FunFam Myb transcription factor 24 76 - -
Prci3g3587 252 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Prci3g3587 252 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 180 IPR044676 GO:0003700|GO:0006355|GO:0043565
Prci3g3587 252 CDD SANT 81 120 IPR001005 -
Prci3g3587 252 Gene3D - 79 143 - -
Prci3g3587 252 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Prci3g3587 252 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Prci3g3587 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 75 IPR017930 -
Prci3g3587 252 CDD SANT 26 71 IPR001005 -
Prci3g3587 252 Gene3D - 22 77 - -
Prci3g3587 252 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Prci3g3587 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Prci3g3587 252 SMART sant 76 124 IPR001005 -
Prci3g3587 252 SMART sant 23 73 IPR001005 -
Prci3g3587 252 MobiDBLite consensus disorder prediction 1 23 - -
Prci3g3587 252 FunFam MYB transcription factor 81 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3587 Prci-Chr3 45430791 45432652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3587 17 252 MYB Transcription Factor Family AT2G47190 54.475 1.73e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g3587 Myb_DNA-binding 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3587 K09422 - gmx:778065 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4140 1 56364837 56366197 Prci3g3587 3 45430791 45432652 CCT