Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3586 ATGGAGCAGCAAGCGATTGATTATTGTAATATGAATGTCAAGTGCAAAGGCGTCGAGATGTCGAGAAGCATGTCAGATTGTGGGTCTTCAGGAAGCGAAGAAGAGATGGGAATCAGGAAAGGGCCATGGACAGAGGAAGAGGATACTATTCTGGCTAACTACATCTCCCTTCACGGCGAAGGCCACTGGAACTCCCTCGCTCGCGCCGCAGGTCTGAAGCGAACGGGTAAGAGCTGCAGATTAAGATGGTTAAACTACCTGCGTCCTAATGTGCGGCGCGGCAATATCTCTCTCCAAGAACAGCTCTTAATTCTCGATCTCCATTCCCGATGGGGAAATAGATGGTCGAAAATAGCGCAAGAGTTGCCCGGCAGAACGGACAACGAGATAAAGAACTATTGGAGGACGCGAGTGGTGAAGCAGGCCAAACAAATGAAATGTGACGTGAACAGCAAACAGTTTAGAGACGCCCTGCGTTTCGTATGGATTCCTCGCTTGGTGGAACGAATCCAGGCCTCGTCATCTCGAACAGCATCGCCCTGCAGCCAGTACTGCTCCCGGCCGCTGCATCATGTGGAATCTACTTCTCTGTCTGATCATTCCATGGCCAGCGGGGACGACGATACCTCCTCTCGCACTCACTCTACAGAAACAAAAGAAGCCTGCAGCTCAGGGAATCGTCACTTGGAGTATCTGCCAGAGTTCCAGGCATTTGAAGAAGGCAATGCTGATCTGTGGACTTACGAGAACATATGCTTCTTGCAACAGCAGTTCGCGGACGACTCGTAG 789 0.5095 MEQQAIDYCNMNVKCKGVEMSRSMSDCGSSGSEEEMGIRKGPWTEEEDTILANYISLHGEGHWNSLARAAGLKRTGKSCRLRWLNYLRPNVRRGNISLQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVVKQAKQMKCDVNSKQFRDALRFVWIPRLVERIQASSSRTASPCSQYCSRPLHHVESTSLSDHSMASGDDDTSSRTHSTETKEACSSGNRHLEYLPEFQAFEEGNADLWTYENICFLQQQFADDS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3586 262 Gene3D - 40 92 - -
Prci3g3586 262 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Prci3g3586 262 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Prci3g3586 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 142 IPR017930 -
Prci3g3586 262 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Prci3g3586 262 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Prci3g3586 262 FunFam MYB transcription factor 97 160 - -
Prci3g3586 262 MobiDBLite consensus disorder prediction 195 223 - -
Prci3g3586 262 CDD SANT 97 136 IPR001005 -
Prci3g3586 262 Gene3D - 97 138 - -
Prci3g3586 262 FunFam Myb transcription factor 40 92 - -
Prci3g3586 262 SUPERFAMILY Homeodomain-like 36 134 IPR009057 -
Prci3g3586 262 CDD SANT 42 87 IPR001005 -
Prci3g3586 262 SMART sant 92 140 IPR001005 -
Prci3g3586 262 SMART sant 39 89 IPR001005 -
Prci3g3586 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 91 IPR017930 -
Prci3g3586 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 35 219 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3586 Prci-Chr3 45417625 45418793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3586 38 175 MYB Transcription Factor Family AT1G48000 76.812 2.23e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g3586 Myb_DNA-binding 9.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3586 K09422 - gmx:100819467 297.36