Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3582 ATGCCTCGTCCGGGGCGGAAACGAGGTTGGCATCTCTCTAACCAAGGAACTTCTCCAGACCAAGTTGATGGTGCTTATAATGTGAAACTTTATGTTGCTCCAGTTCCAAGAACATCAACAGAATCTGATATCCGCCTTGTGTTTGAAGAACATGGAACTATTGTTGAAGTTGTTCTTTTGAAGGATAAGAAAACAGGCGAAAGACAAGGGAGTTGTTTTGTGAAATTTGCAACGTTAGATGAAGCTGAGAGGGCTATCAAAGCTTTAAGCAATCGATATACTTTTCCAGGGGAATCATCATCCATTGTTGTCAGATTTGCTGACCGAGAAAAAGGGCGTCTTGGGATTCGAGGGTTCTCCCAAATTATGGATAAAAAAAATCCCCCAGAAGAGGTGGTGGACAAAGTATTTGTTGGTTACATCAACAAAGAAGCTTCAAAAAGGGAAATTGAAGAAGTATTTTCTCCTTATGGACACGTGGAGGACATCTTCATTGCACAAACTCGTGGATATTGTTTCGTCAAATTTTCAAACAAAGATATGGCTTTGGCAGCAATCAAAGGGCTGAACAATGCATTCACAATGAGGGGTTGTGATCATCCATTAATTGTTCGTTTTGCTGAACCTAAGAAACCTAAGACTGGGGAACCCAGGGTCAACCATATGCCTGGGAATGCATTTGGTCCATGCACTCAAGAACCAGCAGTCTGGCCGTCATCGAACTTTGGTGATTCCATTGGAGGGAGTAATCTGCCTATGGCCCCACATCATCCCGCAATTCCACACCCACAAGTTGCTCCTCATGTTCAAAACTGGGAACCTGCTAATACTATGGTTCAACAACCGTTTCCTTCCAAGCAAGCCCATCCACAATTGGCTCCAATGCCCTCCCAGTCCATGCAGGCTCAGAAGTTACCTTCTCAACCAGTTGTTACTGAGGTACTGAAGCAGTCGCATCCAACAGAATCATCAACTCAAAGTATAGAGCAGCAGCTAAGTTCACAGGTTAGTGGCTAA 1017 0.4385 MPRPGRKRGWHLSNQGTSPDQVDGAYNVKLYVAPVPRTSTESDIRLVFEEHGTIVEVVLLKDKKTGERQGSCFVKFATLDEAERAIKALSNRYTFPGESSSIVVRFADREKGRLGIRGFSQIMDKKNPPEEVVDKVFVGYINKEASKREIEEVFSPYGHVEDIFIAQTRGYCFVKFSNKDMALAAIKGLNNAFTMRGCDHPLIVRFAEPKKPKTGEPRVNHMPGNAFGPCTQEPAVWPSSNFGDSIGGSNLPMAPHHPAIPHPQVAPHVQNWEPANTMVQQPFPSKQAHPQLAPMPSQSMQAQKLPSQPVVTEVLKQSHPTESSTQSIEQQLSSQVSG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3582 338 MobiDBLite consensus disorder prediction 283 338 - -
Prci3g3582 338 MobiDBLite consensus disorder prediction 1 20 - -
Prci3g3582 338 SUPERFAMILY RNA-binding domain, RBD 135 220 IPR035979 GO:0003676
Prci3g3582 338 Gene3D - 18 114 IPR012677 -
Prci3g3582 338 PANTHER RNA BINDING PROTEIN 27 277 - -
Prci3g3582 338 SMART rrm1_1 29 105 IPR000504 GO:0003723
Prci3g3582 338 SMART rrm1_1 135 205 IPR000504 GO:0003723
Prci3g3582 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 97 IPR000504 GO:0003723
Prci3g3582 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 194 IPR000504 GO:0003723
Prci3g3582 338 Gene3D - 123 215 IPR012677 -
Prci3g3582 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 209 IPR000504 GO:0003723
Prci3g3582 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 109 IPR000504 GO:0003723
Prci3g3582 338 SUPERFAMILY RNA-binding domain, RBD 14 116 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3582 Prci-Chr3 45363420 45370504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3582 28 258 Eukaryotic Initiation Factors Gene Family AT1G71770 26.141 1.12e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3582 K13207 - gmx:100776162 464.922