Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3581 ATGCCTCGTCCGGGGCGGAAACGAGGTTGGCATCTCTCTAACCAAGGAACTTCTCCAGACCAAGTTGATGGTGCTTATAATGTGAAACTTTATGTTGCTCCAGTTCCAAGAACATCAACAGAATCTGATATCCGCCTTGTGTTTGAAGAACATGGAACTATTGTTGAAGTTGTTCTTTTGAAGGATAAGAAAACAGGCGAAAGACAAGGGAGTTGTTTTGTGAAATTTGCAACGTTAGATGAAGCTGAGAGGGCTATCAAAGCTTTAAGCAATCGATATACTTTTCCAGGGGAATCATCATCCATTGTTGTCAGATTTGCTGACCGAGAAAAAGGGCGTCTTGGGATTCGAGGGTTCTCCCAAATTATGGATAAAAAAAATCCCCCAGAAGAGGTGGTGGACAAAGTATTTGTTGGTTACATCAACAAAGAAGCTTCAAAAAGGGAAATTGAAGAAGTATTTTCTCCTTATGGACACGTGGAGGACATCTTCATTGCACAAACTCGTGGATATTGTTTCGTCAAATTTTCAAACAAAGATATGGCTTTGGCAGCAATCAAAGGGCTGAACAATGCATTCACAATGAGGGGTTGTGATCATCCATTAATTGTTCGTTTTGCTGAACCTAAGAAACCTAAGACTGGGGAACCCAGGGTCAACCATATGCCTGGGAATGCATTTGGTCCATGCACTCAAGAACCAGCAGTCTGGCCGTCATCGAACTTTGGTGATTCCATTGGAGGGAGTAATCTGCCTATGGCCCCACATCATCCCGCAATTCCACACCCACAAGTTGCTCCTCATGTTCAAAACTGGGAACCTGCTAATACTATGGTTCAACAACCGTTTCCTTCCAAGCAAGCCCATCCACAATTGGCTCCAATGCCCTCCCAGTCCATGCAGGCTCAGAAGTTACCTTCTCAACCAGTTGTTACTGAGGTACTGAAGCAGTCGCATCCAACAGAATCATCAACTCAAAGTATAGAGCAGCAGCTAAGTTCACAGCCTTCGCGGACTGGAGGCAGTCCTTGTACTGTTGCTCGCAGCCCCTCACCAGAGATGCCAGAAAGTCCTGACGAAGAAGTTTATCCAGAGTGTGACTGGAGTGAACATATCTGTCCTGATGGTTATAAGTACTACTATAATTGTGTGACTTGTGAAAGTAGGTGGGAGAAGCCTGAGCAATATGCCTTCTATGAGAACAAAATACAAGAGCAGGAGGATCATGGCTGTCCAAATTCACAATTGGCATTATCTTCCTGA 1263 0.4426 MPRPGRKRGWHLSNQGTSPDQVDGAYNVKLYVAPVPRTSTESDIRLVFEEHGTIVEVVLLKDKKTGERQGSCFVKFATLDEAERAIKALSNRYTFPGESSSIVVRFADREKGRLGIRGFSQIMDKKNPPEEVVDKVFVGYINKEASKREIEEVFSPYGHVEDIFIAQTRGYCFVKFSNKDMALAAIKGLNNAFTMRGCDHPLIVRFAEPKKPKTGEPRVNHMPGNAFGPCTQEPAVWPSSNFGDSIGGSNLPMAPHHPAIPHPQVAPHVQNWEPANTMVQQPFPSKQAHPQLAPMPSQSMQAQKLPSQPVVTEVLKQSHPTESSTQSIEQQLSSQPSRTGGSPCTVARSPSPEMPESPDEEVYPECDWSEHICPDGYKYYYNCVTCESRWEKPEQYAFYENKIQEQEDHGCPNSQLALSS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3581 420 CDD WW 366 394 IPR001202 GO:0005515
Prci3g3581 420 SUPERFAMILY WW domain 367 399 IPR036020 GO:0005515
Prci3g3581 420 MobiDBLite consensus disorder prediction 283 362 - -
Prci3g3581 420 PANTHER RNA BINDING PROTEIN 27 322 - -
Prci3g3581 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 194 IPR000504 GO:0003723
Prci3g3581 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 97 IPR000504 GO:0003723
Prci3g3581 420 ProSitePatterns WW/rsp5/WWP domain signature. 368 393 IPR001202 GO:0005515
Prci3g3581 420 Gene3D - 18 114 IPR012677 -
Prci3g3581 420 ProSiteProfiles WW/rsp5/WWP domain profile. 368 395 IPR001202 GO:0005515
Prci3g3581 420 MobiDBLite consensus disorder prediction 1 21 - -
Prci3g3581 420 SUPERFAMILY RNA-binding domain, RBD 14 116 IPR035979 GO:0003676
Prci3g3581 420 Gene3D - 123 215 IPR012677 -
Prci3g3581 420 SMART ww_5 363 395 IPR001202 GO:0005515
Prci3g3581 420 SMART rrm1_1 29 105 IPR000504 GO:0003723
Prci3g3581 420 SMART rrm1_1 135 205 IPR000504 GO:0003723
Prci3g3581 420 Gene3D - 364 408 - -
Prci3g3581 420 MobiDBLite consensus disorder prediction 283 346 - -
Prci3g3581 420 SUPERFAMILY RNA-binding domain, RBD 135 220 IPR035979 GO:0003676
Prci3g3581 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 109 IPR000504 GO:0003723
Prci3g3581 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 209 IPR000504 GO:0003723
Prci3g3581 420 Pfam WW domain 366 393 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3581 Prci-Chr3 45362164 45370500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3581 30 258 Eukaryotic Initiation Factors Gene Family AT1G71770 26.360 3.92e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3581 K13207 - gmx:100776162 579.326