Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3580 ATGGAGAAGAAAGAGATGGGTGTCAAGACGGAGGAAGCGATTCGATCCTCTTCGAATGGGGGTTACAATTCAAACAGCTTCCCCCTCTCGAGTTTATTTGATTTTCATGAAGTGGAAAAGAGCCCTTTAGGGTTTATGGAGCTTCTGCGTGTGCAGGAGCAGGAGTGTGGTTCCTGGCTAGATTTGCCCCCGCAACTATTTCCTTCTGACCTCAAAAATCAATGTGCCTCTGCAAAAAGGTACTGCGAGCTCAGTCACCAGCCTGCCACTCCAAACTCTTCATCCATTTCATCTGCGTCCAGTGAGGCGGTGAATGATGAACACACTAAAACTGTAGATCAACGAGGAGATGGAAAACCAAAGACCAATAATCAGTTGAGAGCCAAGAAGACAAATCAGAAGAAACAGAGGGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGATGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAGAACAGCCCCTTTCCCAGAAACTACTATCGTTGCACCAGTGTTTCATGTAATGTAAAGAAACGAGTGGAACGATCCTTCACTGATCCAAGCACTGTCGTCACCACCTACGAAGGTCAACACACACATCCAAGCCCCCTCATGCCTCGTTCGACTCTCGCAGGAGCTTCTGTACCAGCGGTTGTCTCCGCCGGATGTGATTCACCTGTAACATCAGGAAATTTATCGCAACAGTATCATGAGCAGCTCCAACATCATGACCATCGTTTCCTAGCTAATACATTGTCGTCTTCGGGTTTTCCTCGCATTTGTGGTTCAAAAAATAATATCGTCGCTTTTCCTCAAGACAGAATGCCTTGCAATCCAGGGACCAATGCTTTTTTAAGGGACCATGGGCTTCTCCAAGATATTATTCCTTCCCATATGTTGAAAGAAGAGTAG 939 0.4654 MEKKEMGVKTEEAIRSSSNGGYNSNSFPLSSLFDFHEVEKSPLGFMELLRVQEQECGSWLDLPPQLFPSDLKNQCASAKRYCELSHQPATPNSSSISSASSEAVNDEHTKTVDQRGDGKPKTNNQLRAKKTNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPFPRNYYRCTSVSCNVKKRVERSFTDPSTVVTTYEGQHTHPSPLMPRSTLAGASVPAVVSAGCDSPVTSGNLSQQYHEQLQHHDHRFLANTLSSSGFPRICGSKNNIVAFPQDRMPCNPGTNAFLRDHGLLQDIIPSHMLKEE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3580 312 MobiDBLite consensus disorder prediction 1 21 - -
Prci3g3580 312 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 243 IPR044810 GO:0003700
Prci3g3580 312 SMART WRKY_cls 152 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci3g3580 312 MobiDBLite consensus disorder prediction 106 124 - -
Prci3g3580 312 PIRSF WRKY_txn_fact_IIc 1 312 IPR017396 GO:0003700
Prci3g3580 312 ProSiteProfiles WRKY domain profile. 147 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci3g3580 312 FunFam WRKY transcription factor 57 138 212 - -
Prci3g3580 312 Gene3D WRKY domain 137 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci3g3580 312 SUPERFAMILY WRKY DNA-binding domain 144 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci3g3580 312 Pfam WRKY DNA -binding domain 153 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci3g3580 312 MobiDBLite consensus disorder prediction 86 138 - -
Prci3g3580 312 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3580 Prci-Chr3 45359241 45360830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3580 31 312 WRKY Transcription Factor Family AT2G47260 45.593 4.83e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Prci3g3580 WRKY 9.2e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g4126 1 56298160 56300362 Prci3g3580 3 45359241 45360830 CCT
Prci3g3580 3 45359241 45360830 Prci3g3580 3 45359241 45360830 ECH