LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g3543	ATGGGCGATTCGGTGCACGCGTCGGCCATCCCGCAAAATGGATTATCGAGCTTTGTTCAAAAGAGTAGAAAGGAGGGATTTAAGCTACTGGTCCCAGTGACAGTGATGATAATTTTTTCATTGTCGAGTTTTCTAATTATAAACGGTGGAGCTGCCATGCGAGAGAAGCGTTGGCTTGCTCCACTGATCAAGCAGATGGAAGCAACTCAACAGGCAGAGAGGAGAAATATGAACAAGAACCTCACCTTAGCTTGTGCCAGCCATGATATTCGTGCCTCTCTCGCCGCCCTTGCTGGTTTGATACAGATGTCGTATCATGAAGCTGTCCCAGGTTCAGAATTGGACACCAATTTAAAGCAAATGGATTCTTGTGCCAGAGACTTACTAGGATTGTTGAACTCTATACTTGACGCCAGCAAGATTGAGGCTGGAAAAATGGAATTAGAGGAAGAAGAGTTTGATCTTCCCCAAGTTTTGGAGGATGTAGTTGATTTATTCCATGCTGCGGCTATGAAGAAAGGTGTGGATCTTGTATTGGACCCTTGTGATGCTTCTATTATCAGATGTTCCCGCATGAAAGGTGACACAGGAAAGCTTAAGCGAGTTTTAGTAAATTTGCTAAGCAACGCCGTTAAATTTACTGATGAGGGGCACATAGCAGTTCGAGCATGGGGTCAGAAGTCAATGACCGCTTCTAACCGTCACAGCCTCATGAAGCATTTATCGTGCTCATTTTATAAGGAGAGTGAAAGGCATAGAAACCCAGAAGCTGTGAATGCAATCCATGGGGACCCTAATGTCATGAATTTTGTGTTTGAAGTGGATGATACCGGAAGAGGAATTCCTAAAGAGAAACACAAGTATGTGTTTGAGAATTATGTTCAGGACAAAGAAACTGCCCTCGGACGAGTAGGCACTGGCTTGCGGCTTGGTATCGTGCAATCGTTGGTACATTTGATGCATGGAGATATAGGAATTGTGGAAGAGGACATGGGAGAAAAGGGAACTTGTTTCAAGTTCAATGTACTCTCTTACTGCGTGTGA	1044	0.4425	MGDSVHASAIPQNGLSSFVQKSRKEGFKLLVPVTVMIIFSLSSFLIINGGAAMREKRWLAPLIKQMEATQQAERRNMNKNLTLACASHDIRASLAALAGLIQMSYHEAVPGSELDTNLKQMDSCARDLLGLLNSILDASKIEAGKMELEEEEFDLPQVLEDVVDLFHAAAMKKGVDLVLDPCDASIIRCSRMKGDTGKLKRVLVNLLSNAVKFTDEGHIAVRAWGQKSMTASNRHSLMKHLSCSFYKESERHRNPEAVNAIHGDPNVMNFVFEVDDTGRGIPKEKHKYVFENYVQDKETALGRVGTGLRLGIVQSLVHLMHGDIGIVEEDMGEKGTCFKFNVLSYCV	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g3543	347	ProSiteProfiles	Histidine kinase domain profile.	85	342	IPR005467	-
	Prci3g3543	347	SMART	HisKA_10	78	144	IPR003661	GO:0000155\|GO:0007165
	Prci3g3543	347	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	133	340	IPR036890	-
	Prci3g3543	347	Gene3D	-	145	345	IPR036890	-
	Prci3g3543	347	PANTHER	TWO-COMPONENT HISTIDINE KINASE	48	343	-	-
	Prci3g3543	347	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	194	342	IPR003594	-
	Prci3g3543	347	SMART	HKATPase_4	194	346	IPR003594	-
	Prci3g3543	347	CDD	HisKA	76	140	IPR003661	GO:0000155\|GO:0007165
	Prci3g3543	347	Gene3D	-	65	144	-	-
	Prci3g3543	347	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	66	146	IPR036097	GO:0000155\|GO:0007165
	Prci3g3543	347	PRINTS	Bacterial sensor protein C-terminal signature	304	322	IPR004358	GO:0016310\|GO:0016772
	Prci3g3543	347	PRINTS	Bacterial sensor protein C-terminal signature	288	298	IPR004358	GO:0016310\|GO:0016772
	Prci3g3543	347	PRINTS	Bacterial sensor protein C-terminal signature	270	284	IPR004358	GO:0016310\|GO:0016772

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g3543	Prci-Chr3	45184952	45187292	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g3543	12	343	Histidine Kinase Gene Family	AT2G47430	51.163	2.56e-105	331

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g3543	-		-	pcin:129307149	685.256