Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3534 ATGTTGGTCAGTACAGTCCAAGTTGCACACATGTCGTTGTGGGCAAACTTACATATGATGATCCTGTTTGCGTTGCTGCAAGAAATGATGGGAAAACACTTGTCACTGCTTTGTGGGTTGATCATAGTGTCGATATTGGAATGCCAGTTGATGCAGCCTCCGTATGTCATGTACAGACCCATGAAAGATTTAAATGGTATACCAGGTGCTAAGAATTTGGTTGTTTGCTTGACTGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCTTGATGGGTGCTGAATTTTCTAAGCCATTGGTGGCGAGCAAAGTTACTCATCTTATATGCTACAAATTTGAAGGAGAAAAGTATGAGCTTGCCAGCAGACTGAAGACAATTAAGTTAGTTAACCATCGATGGTTGGAAGACTGTTTGAAGGATTGGGCACTCCTCCCTGAAGAAAAATATAAGAAGAGCGGTTATGAACTAGAGATGATGGCAGAGGAAGCTAAAGACTCCGAAGAAGAAGCTGAAGATCTCGTGCCAGGGAAATCTGGGGAAAGAGATATAGCTAGGAGTCCCTTTAGTTCAAAAATGAATACTGCTACAGGTGCTTCTGATGGATTTCTGAAAGCAAGTGAGGGGCATGAGTCATTATTAATTCTCAAAAATGAGAATAGATCTGATCAAATCAGAAACATCCATCATGATGTACTAAAATCAAGTTCTGGGGAAGCTGGCATTTCTAGGTATGATGCTTCTGGTCAGCTGCCTGACACATGTGCCAAGACCACTAAACCTAAAAACACTTGCGCTCCAGACGCAGTTGACTGCCAGAATCTTGGCATTCCTGGAAATGCTGATTCATCTGGTTTTCTCCCTGATCTTCATCTTCAAGCCGGTACTACTGAGTATGGGAAGTTGGTTAATGACTTGAGATTGACATCTGAAAGTGTTGAGGGACATGCACATTCAGATGCAAAGGGCAGTGCTGCGAGTAACTCTAGGAAAAACTTGAAGAGATTCTCTCCTCCAAGTGGCTTGAATGAAAACATTGGCAATTTAAGTGGTCCTTCTGCATCACCTTCAAATAATTTGAAATTAAGAAATGACCTAGAAGCCTCTTTGAGCAAGGAGAAAAAGGAAAGTGGCAGCATTAACTGCACCTTTGTTGAGGGTTTTAGAAAAGGAAATGATTTTAGTAACAAGAAGGGGCCAGTTAGTTTATCTCCTAAAAAGATGGTGATTGAAGCTACTACTAAATTTAAATCGAAGACGACAGCAGGTGCTAAACTTTCAGTTGAAAGATCCCCATTAGCAGATTGCGATAAACTACCAGAGATAGAACACCATTTTCCTGTGGGCAAAGATCATATAAAGAGCCCAGAAACTGTGAGCTCAAAGTCTCCGCCAGATGATGATACACCTAAAATTAATGGCAAGCCTGATATTGCTGGTTCTGGCAGTGAAAAAGTTGCTCAAGATGGTAGTGAAACAGAGCCTCATAATGCCAAGAACGATCTTGAGCGCTCATCTTCAAGTAAAAAGAAGCCTAGAAATGAGGAATCAACCGGTCATGCTACCATGGATTTATGCAGCAGAGTAGGTGATAAGTTGATTAGAAAATCACCTCGCAAGAAGACAGTTGCCAAGAAATCTTTGGGTTCTAGACCTAAATCAGGTGCTACTGCTAAAAAGAAGGGTTTGATTTCATTAAATGAAAGTGACCCTCAAGCTGATGGTGCAAGTTGTTTAAGTGGATGGAAAGAGACGACAGTTTTTGATGGCAAGAAGCTTCATAAACCCTCTAAAATTGTTAGTGTTGAAACGTCAGTGGAGCAGGAGATTGTCTGTAAATCAGCAGAAATTGCCAATGGCAGAGAACTTCAGGATGAAGAAACAGAGGCTCCGGATGACAAATCTGAGTGCAAGGGACTGGCAGTTGATGAAGACAATCGTGAATCAGTTAATCTTTTGAAAAAAGCTGTTACCCAGACAGAAGAGAAGTTGGAAGCAAGTCAACATGTATCAAAATCTAAAACACAGCCTCCAAAGGTAGGTACAAATGGAACTAAACCAGTGGTACTGGAGTCGGTTGACTCAACCTCTAAAATAAAAGGAAAGCCTGAAGGGAGAAAACTTACTGAAGGTGGAATCAAGAAAGCCGCATTTACCAAGGACGTAACGAGGCCTAAGGAGGCTGCATCCAGTCAGAGGAAAGATGAGACAAATATGGAAACCATGGATGCAGAGTTATTTCCTGTTGGTAAAAATAGCAGCTCTGCTGTACTGACAAATAATTCAGAGAGTTTTCAGGAAGTTGAGAAGGAAAACAGACCAATTGATGGAGAGGGCAATGGAGAGTGTATAAACATTGGAAATTTCGACGTTAAAATTTGTGCGGGTCAAGCAAAGACCGATAAAAGAACTCAGAAAAGGGCTCTTAATTCATCTATATCAGAAGACAACGAAGGAGTGAAGGGAGAAGCTGCATGTTTTATAGTAAGCGGGCATCGCTTACAGAGAAAGGAGTTTCAACAAATGATTAGGCGATTAAAAGGAAGGGTCTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGATCCTATACGCAGGACAGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGTCAGGCCGGTAAATTCTTGAATGAAGAACCTTATGAATGGCACAAGAGTGGCCTTAGTGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGATGGAGGCTTTTGAAAGAGAAGACAGGTCATGGCGTCTTATATGGGATGCGCACTATTGTATATGGCGATTGCATTGCCCCGCCTTTGGATACACTGAAGCGTGTAGTCAATGCAGGTGATGGAACTATATTAGCAACTTCTCCTCCTTACACCCGGTTCCTTGATAGTGGTGTTGACTATGCCGTAGTTAGCCCAGGCATGCCGCGTGTTGATATGTGGGTCCAAGAGTTCTTAAAACATGAGATACCCTGTGTTTTGGCTGACTACTTGGTGGAGTTTGTGTGCAAGCCCGGATTCTCCCTCGAGAAACATGTACTATACGGGACTCATGCTTGGGCAGAGAGGTCATTTGCTAACCTTCGAAGGAAGGCGGAAGAAGTCATCGAGAATCCTCCAGAAATTGATGATGATAATGACACAGCTTGCCAGGTATGTGGGTCCCGAGATAGAGGAGACGTGATGCTGATTTGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGAGTTGGCGTCCATATTGATTGCTGCGATCCTCCTCTGAAAGATGTTCCGGAGGAGGATTGGTTCTGTTCCGAGTGCAGTGAAACACGAAACCGCTCTAACCCGAACAAGAAAAGGAAAAAAGGCGTCTTGTCTTCCTCGAAGAACAAGTGA 3441 0.4287 MLVSTVQVAHMSLWANLHMMILFALLQEMMGKHLSLLCGLIIVSILECQLMQPPYVMYRPMKDLNGIPGAKNLVVCLTGYQRQDRDDIMTMVGLMGAEFSKPLVASKVTHLICYKFEGEKYELASRLKTIKLVNHRWLEDCLKDWALLPEEKYKKSGYELEMMAEEAKDSEEEAEDLVPGKSGERDIARSPFSSKMNTATGASDGFLKASEGHESLLILKNENRSDQIRNIHHDVLKSSSGEAGISRYDASGQLPDTCAKTTKPKNTCAPDAVDCQNLGIPGNADSSGFLPDLHLQAGTTEYGKLVNDLRLTSESVEGHAHSDAKGSAASNSRKNLKRFSPPSGLNENIGNLSGPSASPSNNLKLRNDLEASLSKEKKESGSINCTFVEGFRKGNDFSNKKGPVSLSPKKMVIEATTKFKSKTTAGAKLSVERSPLADCDKLPEIEHHFPVGKDHIKSPETVSSKSPPDDDTPKINGKPDIAGSGSEKVAQDGSETEPHNAKNDLERSSSSKKKPRNEESTGHATMDLCSRVGDKLIRKSPRKKTVAKKSLGSRPKSGATAKKKGLISLNESDPQADGASCLSGWKETTVFDGKKLHKPSKIVSVETSVEQEIVCKSAEIANGRELQDEETEAPDDKSECKGLAVDEDNRESVNLLKKAVTQTEEKLEASQHVSKSKTQPPKVGTNGTKPVVLESVDSTSKIKGKPEGRKLTEGGIKKAAFTKDVTRPKEAASSQRKDETNMETMDAELFPVGKNSSSAVLTNNSESFQEVEKENRPIDGEGNGECINIGNFDVKICAGQAKTDKRTQKRALNSSISEDNEGVKGEAACFIVSGHRLQRKEFQQMIRRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDYLTACSQAGKFLNEEPYEWHKSGLSEDGAINLEAPRRWRLLKEKTGHGVLYGMRTIVYGDCIAPPLDTLKRVVNAGDGTILATSPPYTRFLDSGVDYAVVSPGMPRVDMWVQEFLKHEIPCVLADYLVEFVCKPGFSLEKHVLYGTHAWAERSFANLRRKAEEVIENPPEIDDDNDTACQVCGSRDRGDVMLICGDESGSVGCGVGVHIDCCDPPLKDVPEEDWFCSECSETRNRSNPNKKRKKGVLSSSKNK 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3534 1146 SUPERFAMILY BRCT domain 67 154 IPR036420 -
Prci3g3534 1146 Pfam twin BRCT domain 73 137 IPR001357 -
Prci3g3534 1146 Gene3D BRCT domain 824 938 IPR036420 -
Prci3g3534 1146 CDD BRCT_TopBP1_rpt7 829 902 - -
Prci3g3534 1146 ProSiteProfiles BRCT domain profile. 830 912 IPR001357 -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 449 581 - -
Prci3g3534 1146 ProSiteProfiles Zinc finger PHD-type profile. 1069 1125 IPR019787 -
Prci3g3534 1146 ProSiteProfiles BRCT domain profile. 71 155 IPR001357 -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 316 363 - -
Prci3g3534 1146 SUPERFAMILY FYVE/PHD zinc finger 1063 1128 IPR011011 -
Prci3g3534 1146 SUPERFAMILY BRCT domain 830 932 IPR036420 -
Prci3g3534 1146 Gene3D BRCT domain 60 185 IPR036420 -
Prci3g3534 1146 Pfam BRCA1 C Terminus (BRCT) domain 832 898 IPR001357 -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 1123 1146 - -
Prci3g3534 1146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1037 1138 IPR013083 -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 492 521 - -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 659 710 - -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 624 646 - -
Prci3g3534 1146 SMART PHD_3 1071 1123 IPR001965 -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 166 191 - -
Prci3g3534 1146 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 716 1137 IPR044254 -
Prci3g3534 1146 Pfam PHD-finger 1072 1124 IPR019787 -
Prci3g3534 1146 Gene3D BRCT domain 940 1036 IPR036420 -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 325 363 - -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 673 695 - -
Prci3g3534 1146 MobiDBLite consensus disorder prediction 1130 1146 - -
Prci3g3534 1146 SMART BRCT_7 940 1027 IPR001357 -
Prci3g3534 1146 SMART BRCT_7 61 145 IPR001357 -
Prci3g3534 1146 SMART BRCT_7 820 902 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3534 Prci-Chr3 45108006 45114331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3534 91 176 Core DNA Replication Machinery Family AT4G02110 75.581 4.51e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci3g3534 BRCT 1.6e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3534 K10728 - qsa:O6P43_007236 879.396