Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3533 ATGTTGGAAACAAGTATTCCATCGCAAGTGTTTTTCAATATTCGTTTCGTTCTCCATGGTTTTGATCCTATCAACGAAAGCAAGGTCCGATTCAAGCTTGTAAACGGCGGTGGGGTTGATGTTGGTCAGTACAGTCCAAGTTGCACACATGTCGTTGTGGGCAAACTTACATATGATGATCCTGTTTGCGTTGCTGCAAGAAATGATGGGAAAACACTTGTCACTGCTTTGTGGGTTGATCATAGTGTCGATATTGGAATGCCAGTTGATGCAGCCTCCGTCATGTACAGACCCATGAAAGATTTAAATGGTATACCAGGTGCTAAGAATTTGGTTGTTTGCTTGACTGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCTTGATGGGTGCTGAATTTTCTAAGCCATTGGTGGCGAGCAAAGTTACTCATCTTATATGCTACAAATTTGAAGGAGAAAAGTATGAGCTTGCCAGCAGACTGAAGACAATTAAGTTAGTTAACCATCGATGGTTGGAAGACTGTTTGAAGGATTGGGCACTCCTCCCTGAAGAAAAATATAAGAAGAGCGGTTATGAACTAGAGATGATGGCAGAGGAAGCTAAAGACTCCGAAGAAGAAGCTGAAGATCTCGTGCCAGGGAAATCTGGGGAAAGAGATATAGCTAGGAGTCCCTTTAGTTCAAAAATGAATACTGCTACAGGTGCTTCTGATGGATTTCTGAAAGCAAGTGAGGGGCATGAGTCATTATTAATTCTCAAAAATGAGAATAGATCTGATCAAATCAGAAACATCCATCATGATGTACTAAAATCAAGTTCTGGGGAAGCTGGCATTTCTAGGTATGATGCTTCTGGTCAGCTGCCTGACACATGTGCCAAGACCACTAAACCTAAAAACACTTGCGCTCCAGACGCAGTTGACTGCCAGAATCTTGGCATTCCTGGAAATGCTGATTCATCTGGTTTTCTCCCTGATCTTCATCTTCAAGCCGGTACTACTGAGTATGGGAAGTTGGTTAATGACTTGAGATTGACATCTGAAAGTGTTGAGGGACATGCACATTCAGATGCAAAGGGCAGTGCTGCGAGTAACTCTAGGAAAAACTTGAAGAGATTCTCTCCTCCAAGTGGCTTGAATGAAAACATTGGCAATTTAAGTGGTCCTTCTGCATCACCTTCAAATAATTTGAAATTAAGAAATGACCTAGAAGCCTCTTTGAGCAAGGAGAAAAAGGAAAGTGGCAGCATTAACTGCACCTTTGTTGAGGGTTTTAGAAAAGGAAATGATTTTAGTAACAAGAAGGGGCCAGTTAGTTTATCTCCTAAAAAGATGGTGATTGAAGCTACTACTAAATTTAAATCGAAGACGACAGCAGGTGCTAAACTTTCAGTTGAAAGATCCCCATTAGCAGATTGCGATAAACTACCAGAGATAGAACACCATTTTCCTGTGGGCAAAGATCATATAAAGAGCCCAGAAACTGTGAGCTCAAAGTCTCCGCCAGATGATGATACACCTAAAATTAATGGCAAGCCTGATATTGCTGGTTCTGGCAGTGAAAAAGTTGCTCAAGATGGTAGTGAAACAGAGCCTCATAATGCCAAGAACGATCTTGAGCGCTCATCTTCAAGTAAAAAGAAGCCTAGAAATGAGGAATCAACCGGTCATGCTACCATGGATTTATGCAGCAGAGTAGGTGATAAGTTGATTAGAAAATCACCTCGCAAGAAGACAGTTGCCAAGAAATCTTTGGGTTCTAGACCTAAATCAGGTGCTACTGCTAAAAAGAAGGGTTTGATTTCATTAAATGAAAGTGACCCTCAAGCTGATGGTGCAAGTTGTTTAAGTGGATGGAAAGAGACGACAGTTTTTGATGGCAAGAAGCTTCATAAACCCTCTAAAATTGTTAGTGTTGAAACGTCAGTGGAGCAGGAGATTGTCTGTAAATCAGCAGAAATTGCCAATGGCAGAGAACTTCAGGATGAAGAAACAGAGGCTCCGGATGACAAATCTGAGTGCAAGGGACTGGCAGTTGATGAAGACAATCGTGAATCAGTTAATCTTTTGAAAAAAGCTGTTACCCAGACAGAAGAGAAGTTGGAAGCAAGTCAACATGTATCAAAATCTAAAACACAGCCTCCAAAGGTAGGTACAAATGGAACTAAACCAGTGGTACTGGAGTCGGTTGACTCAACCTCTAAAATAAAAGGAAAGCCTGAAGGGAGAAAACTTACTGAAGGTGGAATCAAGAAAGCCGCATTTACCAAGGACGTAACGAGGCCTAAGGAGGCTGCATCCAGTCAGAGGAAAGATGAGACAAATATGGAAACCATGGATGCAGAGTTATTTCCTGTTGGTAAAAATAGCAGCTCTGCTGTACTGACAAATAATTCAGAGAGTTTTCAGGAAGTTGAGAAGGAAAACAGACCAATTGATGGAGAGGGCAATGGAGAGTGTATAAACATTGGAAATTTCGACGTTAAAATTTGTGCGGGTCAAGCAAAGACCGATAAAAGAACTCAGAAAAGGGCTCTTAATTCATCTATATCAGAAGACAACGAAGGAGTGAAGGGAGAAGCTGCATGTTTTATAGTAAGCGGGCATCGCTTACAGAGAAAGGAGTTTCAACAAATGATTAGGCGATTAAAAGGAAGGGTCTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGATCCTATACGCAGGACAGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGTCAGGCCGGTAAATTCTTGAATGAAGAACCTTATGAATGGCACAAGAGTGGCCTTAGTGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGATGGAGGCTTTTGAAAGAGAAGACAGGTCATGGCGTCTTATATGGGATGCGCACTATTGTATATGGCGATTGCATTGCCCCGCCTTTGGATACACTGAAGCGTGTAGTCAATGCAGGTGATGGAACTATATTAGCAACTTCTCCTCCTTACACCCGGTTCCTTGATAGTGGTGTTGACTATGCCGTAGTTAGCCCAGGCATGCCGCGTGTTGATATGTGGGTCCAAGAGTTCTTAAAACATGAGATACCCTGTGTTTTGGCTGACTACTTGGTGGAGTTTGTGTGCAAGCCCGGATTCTCCCTCGAGAAACATGTACTATACGGGACTCATGCTTGGGCAGAGAGGTCATTTGCTAACCTTCGAAGGAAGGCGGAAGAAGTCATCGAGAATCCTCCAGAAATTGATGATGATAATGACACAGCTTGCCAGGTATGTGGGTCCCGAGATAGAGGAGACGTGATGCTGATTTGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGAGTTGGCGTCCATATTGATTGCTGCGATCCTCCTCTGAAAGATGTTCCGGAGGAGGATTGGTTCTGTTCCGAGTGCAGTGAAACACGAAACCGCTCTAACCCGAACAAGAAAAGGAAAAAAGGCGTCTTGTCTTCCTCGAAGAACAAGTGA 3555 0.4287 MLETSIPSQVFFNIRFVLHGFDPINESKVRFKLVNGGGVDVGQYSPSCTHVVVGKLTYDDPVCVAARNDGKTLVTALWVDHSVDIGMPVDAASVMYRPMKDLNGIPGAKNLVVCLTGYQRQDRDDIMTMVGLMGAEFSKPLVASKVTHLICYKFEGEKYELASRLKTIKLVNHRWLEDCLKDWALLPEEKYKKSGYELEMMAEEAKDSEEEAEDLVPGKSGERDIARSPFSSKMNTATGASDGFLKASEGHESLLILKNENRSDQIRNIHHDVLKSSSGEAGISRYDASGQLPDTCAKTTKPKNTCAPDAVDCQNLGIPGNADSSGFLPDLHLQAGTTEYGKLVNDLRLTSESVEGHAHSDAKGSAASNSRKNLKRFSPPSGLNENIGNLSGPSASPSNNLKLRNDLEASLSKEKKESGSINCTFVEGFRKGNDFSNKKGPVSLSPKKMVIEATTKFKSKTTAGAKLSVERSPLADCDKLPEIEHHFPVGKDHIKSPETVSSKSPPDDDTPKINGKPDIAGSGSEKVAQDGSETEPHNAKNDLERSSSSKKKPRNEESTGHATMDLCSRVGDKLIRKSPRKKTVAKKSLGSRPKSGATAKKKGLISLNESDPQADGASCLSGWKETTVFDGKKLHKPSKIVSVETSVEQEIVCKSAEIANGRELQDEETEAPDDKSECKGLAVDEDNRESVNLLKKAVTQTEEKLEASQHVSKSKTQPPKVGTNGTKPVVLESVDSTSKIKGKPEGRKLTEGGIKKAAFTKDVTRPKEAASSQRKDETNMETMDAELFPVGKNSSSAVLTNNSESFQEVEKENRPIDGEGNGECINIGNFDVKICAGQAKTDKRTQKRALNSSISEDNEGVKGEAACFIVSGHRLQRKEFQQMIRRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDYLTACSQAGKFLNEEPYEWHKSGLSEDGAINLEAPRRWRLLKEKTGHGVLYGMRTIVYGDCIAPPLDTLKRVVNAGDGTILATSPPYTRFLDSGVDYAVVSPGMPRVDMWVQEFLKHEIPCVLADYLVEFVCKPGFSLEKHVLYGTHAWAERSFANLRRKAEEVIENPPEIDDDNDTACQVCGSRDRGDVMLICGDESGSVGCGVGVHIDCCDPPLKDVPEEDWFCSECSETRNRSNPNKKRKKGVLSSSKNK 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3533 1184 Pfam twin BRCT domain 111 175 IPR001357 -
Prci3g3533 1184 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Prci3g3533 1184 Gene3D BRCT domain 1 95 IPR036420 -
Prci3g3533 1184 SMART BRCT_7 858 940 IPR001357 -
Prci3g3533 1184 SMART BRCT_7 99 183 IPR001357 -
Prci3g3533 1184 SMART BRCT_7 8 86 IPR001357 -
Prci3g3533 1184 SMART BRCT_7 978 1065 IPR001357 -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 1168 1184 - -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 363 401 - -
Prci3g3533 1184 Gene3D BRCT domain 862 976 IPR036420 -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 487 618 - -
Prci3g3533 1184 SUPERFAMILY BRCT domain 868 970 IPR036420 -
Prci3g3533 1184 CDD BRCT_TopBP1_rpt7 867 940 - -
Prci3g3533 1184 Pfam BRCA1 C Terminus (BRCT) domain 870 936 IPR001357 -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 204 229 - -
Prci3g3533 1184 Pfam PHD-finger 1110 1162 IPR019787 -
Prci3g3533 1184 Gene3D BRCT domain 978 1074 IPR036420 -
Prci3g3533 1184 CDD BRCT_PAXIP1_rpt3 15 87 - -
Prci3g3533 1184 SUPERFAMILY BRCT domain 7 91 IPR036420 -
Prci3g3533 1184 Gene3D BRCT domain 98 223 IPR036420 -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 699 748 - -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 711 733 - -
Prci3g3533 1184 SUPERFAMILY FYVE/PHD zinc finger 1101 1166 IPR011011 -
Prci3g3533 1184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1075 1176 IPR013083 -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 354 401 - -
Prci3g3533 1184 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 754 1175 IPR044254 -
Prci3g3533 1184 ProSiteProfiles BRCT domain profile. 868 950 IPR001357 -
Prci3g3533 1184 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 1161 1184 - -
Prci3g3533 1184 ProSiteProfiles Zinc finger PHD-type profile. 1107 1163 IPR019787 -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 530 559 - -
Prci3g3533 1184 SMART PHD_3 1109 1161 IPR001965 -
Prci3g3533 1184 MobiDBLite consensus disorder prediction 662 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3533 Prci-Chr3 45107561 45114331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3533 129 214 Core DNA Replication Machinery Family AT4G02110 75.581 4.58e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci3g3533 BRCT 1.7e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3533 K10728 - qsa:O6P43_007236 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3533 3 45107561 45114331 Prci3g3533 3 45107561 45114331 ECH