Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3532 ATGTTGGAAACAAGTATTCCATCGCAAGTGTTTTTCAATATTCGTTTCGTTCTCCATGGTTTTGATCCTATCAACGAAAGCAAGGTCCGATTCAAGCTTGTAAACGGCGGTGGGGTTGATGTTGGTCAGTACAGTCCAAGTTGCACACATGTCGTTGTGGGCAAACTTACATATGATGATCCTGTTTGCGTTGCTGCAAGAAATGATGGGAAAACACTTGTCACTGCTTTGTGGGTTGATCATAGTGTCGATATTGGAATGCCAGTTGATGCAGCCTCCGTCATGTACAGACCCATGAAAGATTTAAATGGTATACCAGGTGCTAAGAATTTGGTTGTTTGCTTGACTGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCTTGATGGGTGCTGAATTTTCTAAGCCATTGGTGGCGAGCAAAGTTACTCATCTTATATGCTACAAATTTGAAGGAGAAAAGTATGAGCTTGCCAGCAGACTGAAGACAATTAAGTTAGTTAACCATCGATGGTTGGAAGACTGTTTGAAGGATTGGGCACTCCTCCCTGAAGAAAAATATAAGAAGAGCGGTTATGAACTAGAGATGATGGCAGAGGAAGCTAAAGACTCCGAAGAAGAAGCTGAAGATCTCGTGCCAGGGAAATCTGGGGAAAGAGATATAGCTAGGAGTCCCTTTAGTTCAAAAATGAATACTGCTACAGGTGCTTCTGATGGATTTCTGAAAGCAAGTGAGGGGCATGAGTCATTATTAATTCTCAAAAATGAGAATAGATCTGATCAAATCAGAAACATCCATCATGATGTACTAAAATCAAGTTCTGGGGAAGCTGGCATTTCTAGGTATGATGCTTCTGGTCAGCTGCCTGACACATGTGCCAAGACCACTAAACCTAAAAACACTTGCGCTCCAGACGCAGTTGACTGCCAGAATCTTGGCATTCCTGGAAATGCTGATTCATCTGGTTTTCTCCCTGATCTTCATCTTCAAGCCGGTACTACTGAGTATGGGAAGTTGGTTAATGACTTGAGATTGACATCTGAAAGTGTTGAGGGACATGCACATTCAGATGCAAAGGGCAGTGCTGCGAGTAACTCTAGGAAAAACTTGAAGAGATTCTCTCCTCCAAGTGGCTTGAATGAAAACATTGGCAATTTAAGTGGTCCTTCTGCATCACCTTCAAATAATTTGAAATTAAGAAATGACCTAGAAGCCTCTTTGAGCAAGGAGAAAAAGGAAAGTGGCAGCATTAACTGCACCTTTGTTGAGGGTTTTAGAAAAGGAAATGATTTTAGTAACAAGAAGGGGCCAGTTAGTTTATCTCCTAAAAAGATGGTGATTGAAGCTACTACTAAATTTAAATCGAAGACGACAGCAGGTGCTAAACTTTCAGTTGAAAGATCCCCATTAGCAGATTGCGATAAACTACCAGAGATAGAACACCATTTTCCTGTGGGCAAAGATCATATAAAGAGCCCAGAAACTGTGAGCTCAAAGTCTCCGCCAGATGATGATACACCTAAAATTAATGGCAAGCCTGATATTGCTGGTTCTGGCAGTGAAAAAGTTGCTCAAGATGGTAGTGAAACAGAGCCTCATAATGCCAAGAACGATCTTGAGCGCTCATCTTCAAGTAAAAAGAAGCCTAGAAATGAGGAATCAACCGGTCATGCTACCATGGATTTATGCAGCAGAGTAGGTGATAAGTTGATTAGAAAATCACCTCGCAAGAAGACAGTTGCCAAGAAATCTTTGGGTTCTAGACCTAAATCAGGTGCTACTGCTAAAAAGAAGGGTTTGATTTCATTAAATGAAAGTGACCCTCAAGCTGATGGTGCAAGTTGTTTAAGTGGATGGAAAGAGACGACAGTTTTTGATGGCAAGAAGCTTCATAAACCCTCTAAAATTGTTAGTGTTGAAACGTCAGTGGAGCAGGAGATTGTCTGTAAATCAGCAGAAATTGCCAATGGCAGAGAACTTCAGGATGAAGAAACAGAGGCTCCGGATGACAAATCTGAGTGCAAGGGACTGGCAGTTGATGAAGACAATCGTGAATCAGTTAATCTTTTGAAAAAAGCTGTTACCCAGACAGAAGAGAAGTTGGAAGCAAGTCAACATGTATCAAAATCTAAAACACAGCCTCCAAAGGTAGGTACAAATGGAACTAAACCAGTGGTACTGGAGTCGGTTGACTCAACCTCTAAAATAAAAGGAAAGCCTGAAGGGAGAAAACTTACTGAAGGTGGAATCAAGAAAGCCGCATTTACCAAGGACGTAACGAGGCCTAAGGAGGCTGCATCCAGTCAGAGGAAAGATGAGACAAATATGGAAACCATGGATGCAGAGTTATTTCCTGTTGGTAAAAATAGCAGCTCTGCTGTACTGACAAATAATTCAGAGAGTTTTCAGGAAGTTGAGAAGGAAAACAGACCAATTGATGGAGAGGGCAATGGAGAGTGTATAAACATTGGAAATTTCGACGTTAAAATTTGTGCGGGTCAAGCAAAGACCGATAAAAGAACTCAGAAAAGGGCTCTTAATTCATCTATATCAGAAGACAACGAAGGAGTGAAGGGAGAAGCTGCATGTTTTATAGTAAGCGGGCATCGCTTACAGAGAAAGGAGTTTCAACAAATGATTAGGCGATTAAAAGGAAGGGTCTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGATCCTATACGCAGGACAGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGTCAGGCCGGTAAATTCTTGAATGAAGAACCTTATGAATGGCACAAGAGTGGCCTTAGTGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGATGGAGGCTTTTGAAAGAGAAGACAGGTCATGGCGTCTTATATGGGATGCGCACTATTGTATATGGCGATTGCATTGCCCCGCCTTTGGTGATGGAACTATATTAG 3009 0.4187 MLETSIPSQVFFNIRFVLHGFDPINESKVRFKLVNGGGVDVGQYSPSCTHVVVGKLTYDDPVCVAARNDGKTLVTALWVDHSVDIGMPVDAASVMYRPMKDLNGIPGAKNLVVCLTGYQRQDRDDIMTMVGLMGAEFSKPLVASKVTHLICYKFEGEKYELASRLKTIKLVNHRWLEDCLKDWALLPEEKYKKSGYELEMMAEEAKDSEEEAEDLVPGKSGERDIARSPFSSKMNTATGASDGFLKASEGHESLLILKNENRSDQIRNIHHDVLKSSSGEAGISRYDASGQLPDTCAKTTKPKNTCAPDAVDCQNLGIPGNADSSGFLPDLHLQAGTTEYGKLVNDLRLTSESVEGHAHSDAKGSAASNSRKNLKRFSPPSGLNENIGNLSGPSASPSNNLKLRNDLEASLSKEKKESGSINCTFVEGFRKGNDFSNKKGPVSLSPKKMVIEATTKFKSKTTAGAKLSVERSPLADCDKLPEIEHHFPVGKDHIKSPETVSSKSPPDDDTPKINGKPDIAGSGSEKVAQDGSETEPHNAKNDLERSSSSKKKPRNEESTGHATMDLCSRVGDKLIRKSPRKKTVAKKSLGSRPKSGATAKKKGLISLNESDPQADGASCLSGWKETTVFDGKKLHKPSKIVSVETSVEQEIVCKSAEIANGRELQDEETEAPDDKSECKGLAVDEDNRESVNLLKKAVTQTEEKLEASQHVSKSKTQPPKVGTNGTKPVVLESVDSTSKIKGKPEGRKLTEGGIKKAAFTKDVTRPKEAASSQRKDETNMETMDAELFPVGKNSSSAVLTNNSESFQEVEKENRPIDGEGNGECINIGNFDVKICAGQAKTDKRTQKRALNSSISEDNEGVKGEAACFIVSGHRLQRKEFQQMIRRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDYLTACSQAGKFLNEEPYEWHKSGLSEDGAINLEAPRRWRLLKEKTGHGVLYGMRTIVYGDCIAPPLVMELY 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3532 1002 MobiDBLite consensus disorder prediction 204 229 - -
Prci3g3532 1002 Pfam twin BRCT domain 111 175 IPR001357 -
Prci3g3532 1002 Gene3D BRCT domain 98 223 IPR036420 -
Prci3g3532 1002 SMART BRCT_7 858 940 IPR001357 -
Prci3g3532 1002 SMART BRCT_7 99 183 IPR001357 -
Prci3g3532 1002 SMART BRCT_7 8 86 IPR001357 -
Prci3g3532 1002 CDD BRCT_PAXIP1_rpt3 15 87 - -
Prci3g3532 1002 MobiDBLite consensus disorder prediction 699 748 - -
Prci3g3532 1002 MobiDBLite consensus disorder prediction 363 401 - -
Prci3g3532 1002 MobiDBLite consensus disorder prediction 711 733 - -
Prci3g3532 1002 MobiDBLite consensus disorder prediction 354 401 - -
Prci3g3532 1002 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 6 486 IPR044254 -
Prci3g3532 1002 SUPERFAMILY BRCT domain 7 91 IPR036420 -
Prci3g3532 1002 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Prci3g3532 1002 Gene3D BRCT domain 1 95 IPR036420 -
Prci3g3532 1002 Gene3D BRCT domain 862 976 IPR036420 -
Prci3g3532 1002 ProSiteProfiles BRCT domain profile. 868 950 IPR001357 -
Prci3g3532 1002 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Prci3g3532 1002 MobiDBLite consensus disorder prediction 487 618 - -
Prci3g3532 1002 CDD BRCT_TopBP1_rpt7 867 940 - -
Prci3g3532 1002 MobiDBLite consensus disorder prediction 530 559 - -
Prci3g3532 1002 Pfam BRCA1 C Terminus (BRCT) domain 870 936 IPR001357 -
Prci3g3532 1002 SUPERFAMILY BRCT domain 868 970 IPR036420 -
Prci3g3532 1002 MobiDBLite consensus disorder prediction 662 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3532 Prci-Chr3 45107556 45113639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3532 864 997 Core DNA Replication Machinery Family AT4G02110 73.881 4.85e-62 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3532 K10728 - qsa:O6P43_010846 790.03