Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3527 ATGGGAAGAGCACCCTGCTGTGAGAAAGTGGGGTTGAAGAGGGGCAGATGGAGTGCCCAGGAGGATGAGATCTTGACTAAGTACATTCAGGCCAATGGGGAAGGCTCTTGGAGGGCTCTGCCCAAGAATGCTGGACTGCTGAGGTGTGGGAAGAGTTGCAGGTTAAGGTGGATCAACTACTTGAGATCTGACCTTAAAAGGGGCAACATTTCTCCTCAGGAGGAAGAGCTCATTATTAAACTCCATTCTTCTCTGGGCAACAGGTGGTCCCTGATAGCGAGTCACTTGCCAGGAAGAACAGACAACGAGATAAAAAACTACTGGAATTCTCACTTGAGCAGGAAAATCTACGCCTTCAAGAGGCCGGTTGTTACGGATCAGACTAAGCAAGCAGCTGTGACCACGGACACAGTCACAGCCAAGCCGGCAAACAATAGTACAGCAACCAAGCGCAAGGCTGGCAGAACCAGCCGTTGGGCCATGAAGAAGAACAGAAGCAACAACCAAGAGGCCAAGGAGAGAACGAATCATAACAACGTAGCAGCAGTTACAGTGCCACCCACGCCGTCACTAGAGGACGAAGGCTTGTCCATAACAAGCGTCATAGACTTCGAGGATTTCATGGCTCTGGATGGTGACAATACGGAAGACAGAGTAGAGAGAGAAGAAGCAGGTGAGCCAAGTAACAATGAAGAAAGCGGAGATGGTTTGTTGAGGTTAGGTGAAGAGAGAGAAACAGAGCAGACAACACTGGAGGGTCTTGAGGAAGGCGTTGATGGTGGTGGGGAGTCATGTCTTAATGACATGGTGGACACTTGGTTGCTGGAAGACGAAGGTGGTGGGCTTTCGAGCTTGACAGGGGGGGGAGAGAGAGATGATGAGGTGTCATGTTTTGATTACACAAGGGCGTCACGAGAGCAGCCAGAGGGTAGCAATAATAATTCTGAAGACTGGTATTCTTGCTCTTCCATGCCTTCCCTGTTTGAATACGATTACTGGAATAATTGGGAGATTGATGTGGACGATCAGTTGATGAATAATAACGAGTCGCGGACATGGGACGATAAACAAATCGTGTCTTGGCTCTGGGAAGACGATGATTGTCAGGTTACTGGAATCGCTGATCCTGATGAGAAGCAAAATCTCAAGCCGCGTTTGATTGTTTCCTGA 1170 0.4897 MGRAPCCEKVGLKRGRWSAQEDEILTKYIQANGEGSWRALPKNAGLLRCGKSCRLRWINYLRSDLKRGNISPQEEELIIKLHSSLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYAFKRPVVTDQTKQAAVTTDTVTAKPANNSTATKRKAGRTSRWAMKKNRSNNQEAKERTNHNNVAAVTVPPTPSLEDEGLSITSVIDFEDFMALDGDNTEDRVEREEAGEPSNNEESGDGLLRLGEERETEQTTLEGLEEGVDGGGESCLNDMVDTWLLEDEGGGLSSLTGGGERDDEVSCFDYTRASREQPEGSNNNSEDWYSCSSMPSLFEYDYWNNWEIDVDDQLMNNNESRTWDDKQIVSWLWEDDDCQVTGIADPDEKQNLKPRLIVS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3527 389 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci3g3527 389 FunFam Myb transcription factor 71 116 - -
Prci3g3527 389 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci3g3527 389 MobiDBLite consensus disorder prediction 214 228 - -
Prci3g3527 389 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Prci3g3527 389 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci3g3527 389 CDD SANT 16 61 IPR001005 -
Prci3g3527 389 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 197 - -
Prci3g3527 389 MobiDBLite consensus disorder prediction 214 238 - -
Prci3g3527 389 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci3g3527 389 Gene3D - 14 66 - -
Prci3g3527 389 MobiDBLite consensus disorder prediction 143 175 - -
Prci3g3527 389 SMART sant 13 63 IPR001005 -
Prci3g3527 389 SMART sant 66 114 IPR001005 -
Prci3g3527 389 Gene3D - 71 116 - -
Prci3g3527 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci3g3527 389 FunFam Myb transcription factor 11 67 - -
Prci3g3527 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci3g3527 389 CDD SANT 71 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3527 Prci-Chr3 45072885 45075161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3527 1 162 MYB Transcription Factor Family AT2G47460 72.222 5.21e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g3527 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3527 K09422 - gmx:100814275 308.531