Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3501 ATGGTGTCGCTCAAGTTGCAGAAGCGGCTCGCTGCTAGCGTGTTGAAGTGCGGCAGGGGCAAGGTTTGGCTGGATCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGGCAAAACATAAGGAAGTTGGTTAAGGATGGCTTCATTATTAGGAAACCGACTAAAATTCACTCTCGTTCCCGTGCTCGGCGTATGAAGGAGGCCAAGAGAAAAGGACGCCACTCTGGATATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACTAAAGTCCTCTGGATGAGGAGGATGCGAGTGCTCAGACGCTTGCTACGCAAGTACAGGGAGTCCAAAAAGATTGACAAACACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAAAGAGTTCTGATGGAGAGCATACACAAATCTAAGGCTGAGAAGGCAAGAGAGAAGACGTTGTCTGACCAGTTTGAAGCCAAGCGTGCCAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCCCGCCGAGAGGAGCGCTTGGCTCAGGGTCCTGGAGAAAAGACATCAGTAGCGCCACCTGCTCCTGTTTCCCAAGTATCAAAGAAATCCAAGAAGTAA 621 0.4863 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKTSVAPPAPVSQVSKKSKK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3501 206 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Prci3g3501 206 MobiDBLite consensus disorder prediction 57 85 - -
Prci3g3501 206 FunFam Ribosomal protein L19 57 192 - -
Prci3g3501 206 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Prci3g3501 206 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Prci3g3501 206 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Prci3g3501 206 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Prci3g3501 206 FunFam Ribosomal protein L19 1 56 - -
Prci3g3501 206 Gene3D - 57 190 - -
Prci3g3501 206 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Prci3g3501 206 MobiDBLite consensus disorder prediction 149 184 - -
Prci3g3501 206 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Prci3g3501 206 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Prci3g3501 206 MobiDBLite consensus disorder prediction 149 206 - -
Prci3g3501 206 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3501 Prci-Chr3 44937923 44940103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3501 1 206 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.211 1.02e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3501 K02885 - apan:127266729 372.089