Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3500 ATGTGTGGGGGTGCTATCATAGCCGACTTCATTCCTCGCCACCGTGGCCGCCGCCTTACCCCCTCCGACATCTGGCCCGATACGCTCGGAAACCACGATGACTTCCACTCGGAGGCTTCTCACTCTGCACTAGTCCGCCAAAACCCTCAACTTCCCGCAGTAGTTGAGCAGGTGGAGAAGCCCGTCAAGAGGCAGAGGAAGAACCTCTACAGAGGGATTCGGCAACGTCCGTGGGGTAAGTGGGCCGCTGAGATTCGCGATCCGAGGAAAGGAGTTCGTGTTTGGCTCGGCACTTACAACACCGCAGAAGAAGCTGCCAGGGCCTACGACAGAGAAGCTCGTAAGATCCGTGGCAAGAAAGCCAAGGTCAATTTTCCCAACGAAGACGACGATCGCTCCGTTCAAGCTCGTCGTAACCCGCCACCTCCGGCCCAACGGTCCGACGGTGCCCCAAGAAGTCTGAATCTGGAGTTCGGTTATGATCTGAACCAAGGCGGAGCAGCTTGTTCCTGCGGGGGAGCATCAGGGTCACAGGGAGGTTACTCGACGGTGGAGTTGGTGGACTGGGATCGGAGAAAGGGAAGCGAGGGAGGGAAAACAAAGAGGGTGGCGATGGAAGGGGAGGAAGAAGAGAACCAGGCAGGGGAGCTATCGGAGGAGCTGATGGCGTACGAGAACTACATGAAGTTTTATCAGATGCCATACTACGACGGCCAGTCGGCGGCACGAAATACGGTTCAAGAGAACGTAGTCGGGGAGTTGTGGAGCTTCGACGATGAAGTCATTCCTGCATGCGGGACATCGTCCGCCATGTGA 816 0.5711 MCGGAIIADFIPRHRGRRLTPSDIWPDTLGNHDDFHSEASHSALVRQNPQLPAVVEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTYNTAEEAARAYDREARKIRGKKAKVNFPNEDDDRSVQARRNPPPPAQRSDGAPRSLNLEFGYDLNQGGAACSCGGASGSQGGYSTVELVDWDRRKGSEGGKTKRVAMEGEEEENQAGELSEELMAYENYMKFYQMPYYDGQSAARNTVQENVVGELWSFDDEVIPACGTSSAM 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3500 271 MobiDBLite consensus disorder prediction 120 155 - -
Prci3g3500 271 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Prci3g3500 271 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Prci3g3500 271 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Prci3g3500 271 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Prci3g3500 271 MobiDBLite consensus disorder prediction 120 136 - -
Prci3g3500 271 PANTHER DNA-BINDING DOMAIN 49 195 IPR044808 GO:0003700|GO:0009873
Prci3g3500 271 FunFam Ethylene-responsive transcription factor 2 68 127 - -
Prci3g3500 271 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Prci3g3500 271 CDD AP2 70 127 IPR001471 GO:0003700|GO:0006355
Prci3g3500 271 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Prci3g3500 271 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3500 Prci-Chr3 44935527 44936761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3500 1 127 AP2-EREBP Transcription Factor Family AT3G16770 55.882 3.63e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci3g3500 AP2 7.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3500 K09286 - gmx:100819416 294.278