Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3499 ATGTGTGGGGGTGCTATCATAGCCGACTTCATTCCTCGCCACCGTGGCCGCCGCCTTACCCCCTCCGACATCTGGCCCGATACGCTCGGAAACCACGATGACTTCCACTCGGAGGCTTCTCACTCTGCACTAGTCCGCCAAAACCCTCAACTTCCCGCAGTTGAGCAGGTGGAGAAGCCCGTCAAGAGGCAGAGGAAGAACCTCTACAGAGGGATTCGGCAACGTCCGTGGGGTAAGTGGGCCGCTGAGATTCGCGATCCGAGGAAAGGAGTTCGTGTTTGGCTCGGCACTTACAACACCGCAGAAGAAGCTGCCAGGGCCTACGACAGAGAAGCTCGTAAGATCCGTGGCAAGAAAGCCAAGGTCAATTTTCCCAACGAAGACGACGATCGCTCCGTTCAAGCTCGTCGTAACCCGCCACCTCCGGCCCAACGGTCCGACGGTGCCCCAAGAAGTCTGAATCTGGAGTTCGGTTATGATCTGAACCAAGGCGGAGCAGCTTGTTCCTGCGGGGGAGCATCAGGGTCACAGGGAGGTTACTCGACGGTGGAGTTGGTGGACTGGGATCGGAGAAAGGGAAGCGAGGGAGGGAAAACAAAGAGGGTGGCGATGGAAGGGGAGGAAGAAGAGAACCAGGCAGGGGAGCTATCGGAGGAGCTGATGGCGTACGAGAACTACATGAAGTTTTATCAGATGCCATACTACGACGGCCAGTCGGCGGCACGAAATACGGTTCAAGAGAACGTAGTCGGGGAGTTGTGGAGCTTCGACGATGAAGTCATTCCTGCATGCGGGACATCGTCCGCCATGTGA 813 0.572 MCGGAIIADFIPRHRGRRLTPSDIWPDTLGNHDDFHSEASHSALVRQNPQLPAVEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTYNTAEEAARAYDREARKIRGKKAKVNFPNEDDDRSVQARRNPPPPAQRSDGAPRSLNLEFGYDLNQGGAACSCGGASGSQGGYSTVELVDWDRRKGSEGGKTKRVAMEGEEEENQAGELSEELMAYENYMKFYQMPYYDGQSAARNTVQENVVGELWSFDDEVIPACGTSSAM 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3499 270 SUPERFAMILY DNA-binding domain 68 126 IPR016177 GO:0003677
Prci3g3499 270 CDD AP2 69 126 IPR001471 GO:0003700|GO:0006355
Prci3g3499 270 ProSiteProfiles AP2/ERF domain profile. 68 125 IPR001471 GO:0003700|GO:0006355
Prci3g3499 270 PANTHER DNA-BINDING DOMAIN 49 194 IPR044808 GO:0003700|GO:0009873
Prci3g3499 270 FunFam Ethylene-responsive transcription factor 2 67 126 - -
Prci3g3499 270 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Prci3g3499 270 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Prci3g3499 270 MobiDBLite consensus disorder prediction 119 154 - -
Prci3g3499 270 Gene3D AP2/ERF domain 68 126 IPR036955 GO:0003700|GO:0006355
Prci3g3499 270 Pfam AP2 domain 69 117 IPR001471 GO:0003700|GO:0006355
Prci3g3499 270 SMART rav1_2 68 131 IPR001471 GO:0003700|GO:0006355
Prci3g3499 270 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3499 Prci-Chr3 44935523 44936761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3499 1 126 AP2-EREBP Transcription Factor Family AT3G16770 56.618 2.09e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci3g3499 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3499 K09286 - gmx:100780763 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3499 3 44935523 44936761 Prci3g3499 3 44935523 44936761 ECH