Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3459 ATGAAGTTCTGCAAGAAATACGAAGAATACATGCAAGGCCAGCAGAAGAAACTTCCTGGAGTTGGTATCAAGAAGCTCAAGAAGATATTGAAAAAATGCAGCAGAGACTGCCGATCCCGCAAAGGCCTTAATGAAGCCATTGGCGTCAGAACCTGCAGCGACCAATGCCCAGTGTGTGATGGAAGCTTCTTCCCTTCCCTTCTCGACGGGATGACTGAAGTAGTAGGTTGTTTTAATGAGCGTGCCCAAAAGTTGTTGAAGCTGCATCTTGCTTCTGGCTTCAGAAAGTACCTTTTCTGGATCAAAGGCAACTTACCTGGAAAACAAACCGCCCTCGTTCAAGAAGGCAAAGACCTGGTTATTTATGCTCTAATTAATGCCATTGCAATTCGAAAGATACTCAAGAAATATGATAAGATTCATTATTCGAAACAAGGACAATTATTTAAGTCAGAAGCCCAGAGTAAGCACATGGAAATTCTTCAGAGTCCCTGGCTTTGTGAGCTCATGGCATTCCACATCAATTTAAGGGAAACCAAGAATAAATCAATGAAGAGGCCACCTGCTTTCTTTGATGGATGTTCCCTCATATATAAGGACGATAAACCATCACTTACTTGTGAGCGATTTGATTCCATCAAACTTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTATTTGATCCAGTTTGTCTTACTTGTGGCCACATATTCTGCTACATGTGTGCTTGCTCGTCTGCATCAGTAACTATTGTTGATGGACTTGAGGCAGCAAATTCTAATGCGAAATGTCCTCTCTGCCGAGTGCGAGGAGTCTATCAAGGTGCCGTGCGTTTGGAAGAGTTAAACATTTTGTTAGGCCGAAGCTGCAAGGGATACTGGGAACAAAGGCTCCGGACAGAGAGGGCTGAGAGGGTTGAACAAATAAAGGAGCATTGGGAATCCCAGTGTAGGGCGTTAGTGGGCGTCTAG 978 0.4366 MKFCKKYEEYMQGQQKKLPGVGIKKLKKILKKCSRDCRSRKGLNEAIGVRTCSDQCPVCDGSFFPSLLDGMTEVVGCFNERAQKLLKLHLASGFRKYLFWIKGNLPGKQTALVQEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSEAQSKHMEILQSPWLCELMAFHINLRETKNKSMKRPPAFFDGCSLIYKDDKPSLTCERFDSIKLDIDLTCSICLDTVFDPVCLTCGHIFCYMCACSSASVTIVDGLEAANSNAKCPLCRVRGVYQGAVRLEELNILLGRSCKGYWEQRLRTERAERVEQIKEHWESQCRALVGV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3459 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Prci3g3459 325 CDD RING-HC_BAH1-like 211 284 - -
Prci3g3459 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 323 IPR013083 -
Prci3g3459 325 Pfam Zinc finger, C3HC4 type (RING finger) 218 270 - -
Prci3g3459 325 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Prci3g3459 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Prci3g3459 325 SMART ring_2 221 269 IPR001841 -
Prci3g3459 325 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Prci3g3459 325 SUPERFAMILY RING/U-box 214 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3459 Prci-Chr3 44727105 44730223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3459 218 270 C3H Transcription Factor Family AT4G28270 41.379 1.37e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3459 K16275 - gmx:100797432 508.834