Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3423 ATGAGTGATAACTCAGAGAGAGAAGGCTTCAATAAGTACAGCTTCAACAACACAGGCGCTTTTCATCATCATCAAGACGGGGAAGTCATCAAGGAGCAAGATCGCTTGCTTCCGATAGCTAATGTGGGGAGGATCATGAAGCAAATTCTGCCTCCGAACGCCAAAATATCCAAAGAAGCCAAGGAAACCATGCAGGAATGTGTTTCCGAGTTCATAAGCTTCGTCACCGGGGAGGCCTCTGACAAGTGTCACAAGGAGAAGCGCAAGACGGTGAATGGCGATGATATTTGCTGGGCCCTCGCTACTCTAGGGTTTGATGACTACGCCGAGCCGCTCAAGAGGTATTTGCTTAAGTTCAGGGAATCTGAGGGGGAGAGATCTAACCAAAATAAGGGTTACGATCTTCATACCCATGAAACTAATACTGCTGCTGACCAGTCATATGAATATGAAGGCGAGCCTCCTAGGGGAGCTCCGTCTGGTATGAAGTTCAATGGCACCTCTCATCAGTCACGCCAGTTTTCAAACTCTACTAGCTACCTTTCTTAA 549 0.4736 MSDNSEREGFNKYSFNNTGAFHHHQDGEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLLKFRESEGERSNQNKGYDLHTHETNTAADQSYEYEGEPPRGAPSGMKFNGTSHQSRQFSNSTSYLS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3423 182 SUPERFAMILY Histone-fold 33 143 IPR009072 GO:0046982
Prci3g3423 182 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
Prci3g3423 182 Gene3D Histone, subunit A 23 154 IPR009072 GO:0046982
Prci3g3423 182 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Prci3g3423 182 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Prci3g3423 182 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Prci3g3423 182 MobiDBLite consensus disorder prediction 163 182 - -
Prci3g3423 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci3g3423 182 FunFam Nuclear transcription factor Y subunit B-3 25 150 - -
Prci3g3423 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Prci3g3423 182 MobiDBLite consensus disorder prediction 126 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3423 Prci-Chr3 44560589 44561501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3423 10 128 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.669 1.58e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci3g3423 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3423 K08065 - qsa:O6P43_010740 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3423 3 44560589 44561501 Prci3g3423 3 44560589 44561501 ECH