LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g3418	ATGATGGAGGGTTTCAAAGACGAATTCTCAGAGCTAGAGATTGGGAATTCAGTGGAGTCGTTCCAGAAATTTCTGGTTTCGCAAAGGGAGCTCTTCCACAGCCAGATCGATCAGCTTCAGAAAATAGTTGTCACGCAATGCAAACTAACTGGTGTTAATCCTCTCTCTCAAGAAATGGCAGCTGGCGCTCTGTCAATAAAAATTGGAAAAAGACCTAGGGATTTGTTAAATCCAAAAGCTATAAACTACATGCAATTAGTTTTCTCCATTAAAGATGCAATCAGTAAGAAAGAATCTCGTGAGATCAGTGCTTTATTTGGTGTCACAGTGACACAGGTTCGTGAATTTTTCAATATTCAACGCTCAAGAGTGAGAAGACAAGTACGATTGTCAAGGGAAAGGGTGTTAAGATCTAACTACTCTGAAGAACCTTGTGATGGCTTCCCAGTAAACTCTGATTCCATGATACCAATTAATCCAGCTCCCTTAAACTCTGCTGGTCCCATCAGTGCAGATGAAGCATCTTGTTCAACACTGGAGGCTTCATTTTCTGGCCTAAACAGCTCAGAGAAACATTTTGTTGATAATATCTTTAGTCTAATGCGGAAAGAGGAGACATTTTCAGGGCAGGTGAAATTGTTGGAGTGGATATTGAAGATACAGGATGCTCTAGTACTAATTTGGTTTTTAGACTGTGGAGGAGTGATGATTTTAGCAGCATGGTTGAATGAAGCAGCTGTTGAAGAGCAAACAAGTGTCCTTCTTCTTATTTTAAAGGTCCTTTGTCATTTGCCTCTACACAAAGCCCTTCCTACGCACATTTCAGCTATATTGCAGTGTGTTAATAGACTTCGGTTTCACAGAACACCAGACATATCAAACAGTGCCCGTGTTTTGCTATCAAAGTGGAGCAAATTATTAGCGAAGAACCAAGCAATAAAGAAAACCACAGGTGTTAAACCTGGTAGTGAGGCTCAAAGGGAGATGGTTGGTCAGAGGGTTCATCAAATTATGGGCACTGGATCCTGGAATTCAAATGTCGGTATTCCTGAGGACGTTCTTGCCCTTTCAAATGAAGGTTCAGATGATTTCAGGAAATCTGAAGCTCCACAAACTGTGAAATTATTGACTGCATCTTTGGACGATTCTCCTAAGAAGTCTGTCCTAGGTGTATCACTGTCTCAGACTAGGGAGCGCCGAAAAGTGCAGTTAGTGGAGCAGCCAGGCCAAAAGACAGTGAGCAGAAGTCCACAAGCTGTAAGAGTAGGGCCTGTAAGTCTAGGTCGCCCCATGTCTGCTGATGATATCCAGAAAGCAAAACTGCGCGCTTTATTTATGCAAAGCAAATATGGGAAACCTGGTTCATCTAAAGGAAGTAAAGAAGCAAAGACTGATGGCCTGAATAAACCTCAGACAAATCAGGGTGGTCTTGGGTCTTCCTCGTCTAAAGTTCCTGTATCAACCAAAACTGATGAAGACAGCAAACCTCTGTTGCTTCCTTCTAAAACTTCTAATATGAAGGATGCTTCTTTGGAATCATATTTGAGAATGGATTTGAAGGAATCTTTCTGGGAGAAGTGCAAGCAGGTGCAAATCCTGTGGAAGACACCAGCAGAAATGAAACTTAACGGTACATGGAGAGTTGGTGCTGGTGAAAACAGCAAAGAGGTTGATGTTCAGAAAAGTAGAAATCGGAGGGGGGTGGAGACAATTTATCAGACTATCCAGGAGATACCATCAAACCCCAACGAGCCATGGGACCTTGAAATGGACTACGATGACACGCTGACCCCAACAGTCCCTATTGAACAGCTTCCTGATGTTGATGGTGCAGAAACACCAGCTCCTGCCAATCAAGGTATTCAAGTGACGACCCCTTCATCTTCAAACACTAATTCCAACGTTGCAGAACCTGATCTGGAGCTGCTTGCTGTACTTCTTAAAAACCCCGAGTTGGTGTTTGCCTTGACTTCTGGACAAGCTGCTAGCATACCGAGTGAGGAAACCGTAAAGCTGCTTGACATGATAAAAAAAGGTAGTGTCCCTTTGGCTGACAATACAAATGGCAACATTGGTGGAAAGGCGCAGGAGAACGTGGAAGTTTCACTTCCTTCTCCAACTCCCTCTAACGATCCAAGAACGAGTGGATGGACGGCGGAAGTTGCAAAGAATCCTTTTTCACGCCACACCTCAGTGCCTGACCGAGGTATCAGCTTTCCAGCAGCTGTAAGCAACATGGTATTGCCTCAGGTTCCAGCAGCCGCTGCCGTCGCAGTACGACAGCATCAAACTGATTCGCTGTCTCAAGCACCTAATGTTGTTTCTGCTCTTTCCTCTGTGCATCCAAATCTGCTAACCAATTCTCCAACAGCACAAATGCTATCATCAAACATAGGTTTAAGTACCATGATGAGCGACAAAATCCCTGCGTGTGCATCGTCTGTTAACTTATCCACTGCACACTCATCTTTAGCAATGCGGGTAGATAGCACCAGTATCGGTAGTAATGTAAAACCAATAGCTAATTTGAGAATACAAGAGGGATTGTCTAATTCACATCTGCAATCGTATGAGCTGCCATCTCCAACGCTGACTCCAACGCTAACAAGTTCAGTCACACCCCTACAAAGGCATGCCCATTTATTGCAGCAGTCCCATTTTTATGAGCCTTCCTCTCATAACCCTCTACATTCCCACCCTCCTCCTTCAATGGAAAGACAAGGTCATGCATCAGAGTCTTGGAGACTTAGGCAGGATATATCTTCCAGTCATCATTCTCTACTAAATCAAAACACTTACAAGGCATCGGTTGAAAGATCCAAGCGATCCGGTTCTTCTTGGGAGCAAAATGATTATGGAGGAGGAGAATTTGAATCATGGAGTCCAGAGAATAGCCCAAGTAGAAATAACGGGCATATTCGGGGAAGAAGTTTCCCTGAATCGAGAATGAACCCTGGGAGGGATTATAGGCCTGAATGGTCAAGACATCGGGGTTCTTCTGGTTACTGGGATCCTGGTAGACAGGGAAGCAGGAAGTGGCATGAACAAAGGCGATGA	3057	0.44	MMEGFKDEFSELEIGNSVESFQKFLVSQRELFHSQIDQLQKIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAINYMQLVFSIKDAISKKESREISALFGVTVTQVREFFNIQRSRVRRQVRLSRERVLRSNYSEEPCDGFPVNSDSMIPINPAPLNSAGPISADEASCSTLEASFSGLNSSEKHFVDNIFSLMRKEETFSGQVKLLEWILKIQDALVLIWFLDCGGVMILAAWLNEAAVEEQTSVLLLILKVLCHLPLHKALPTHISAILQCVNRLRFHRTPDISNSARVLLSKWSKLLAKNQAIKKTTGVKPGSEAQREMVGQRVHQIMGTGSWNSNVGIPEDVLALSNEGSDDFRKSEAPQTVKLLTASLDDSPKKSVLGVSLSQTRERRKVQLVEQPGQKTVSRSPQAVRVGPVSLGRPMSADDIQKAKLRALFMQSKYGKPGSSKGSKEAKTDGLNKPQTNQGGLGSSSSKVPVSTKTDEDSKPLLLPSKTSNMKDASLESYLRMDLKESFWEKCKQVQILWKTPAEMKLNGTWRVGAGENSKEVDVQKSRNRRGVETIYQTIQEIPSNPNEPWDLEMDYDDTLTPTVPIEQLPDVDGAETPAPANQGIQVTTPSSSNTNSNVAEPDLELLAVLLKNPELVFALTSGQAASIPSEETVKLLDMIKKGSVPLADNTNGNIGGKAQENVEVSLPSPTPSNDPRTSGWTAEVAKNPFSRHTSVPDRGISFPAAVSNMVLPQVPAAAAVAVRQHQTDSLSQAPNVVSALSSVHPNLLTNSPTAQMLSSNIGLSTMMSDKIPACASSVNLSTAHSSLAMRVDSTSIGSNVKPIANLRIQEGLSNSHLQSYELPSPTLTPTLTSSVTPLQRHAHLLQQSHFYEPSSHNPLHSHPPPSMERQGHASESWRLRQDISSSHHSLLNQNTYKASVERSKRSGSSWEQNDYGGGEFESWSPENSPSRNNGHIRGRSFPESRMNPGRDYRPEWSRHRGSSGYWDPGRQGSRKWHEQRR	1018

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	889	1018	-	-
	Prci3g3418	1018	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED	107	999	-	-
	Prci3g3418	1018	ProSiteProfiles	'Homeobox' domain profile.	67	127	IPR001356	GO:0003677
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	617	634	-	-
	Prci3g3418	1018	SMART	HOX_1	69	131	IPR001356	GO:0003677
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	981	997	-	-
	Prci3g3418	1018	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	228	315	IPR035441	-
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	465	487	-	-
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	609	634	-	-
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	399	431	-	-
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	960	974	-	-
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	449	504	-	-
	Prci3g3418	1018	MobiDBLite	consensus disorder prediction	914	952	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g3418	Prci-Chr3	44526048	44536178	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g3418	2	732	Homeobox Transcription Factor Family	AT4G02560	50.688	0.0	692