Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3406 ATGGAAACGTTCCAGAGTCCCATGATGGTTAATCGAACTATTTCTTGCGCCTTTCCTTCCAGACAATCCAAGCAGATTTTTGGGGTTTCAAATTCACGTCTCTTGTTCATTTTTCTGAACCGATCACCTCCCAGACCAGTCTCCTTCAAAATCGAAGCAAATAATTCGAATTTCACCTTCTCTTACCTCGTAGGTTCTTGTGGGTTGGCTCCAGAAGCTGCTACTTCGGTGTCGCAGAAGGTACAACTGCATTCAAGTGAGAGACCAGACTCCGTCCTAACCCTGCTCAGAGAACACGGCCTCTCAAAATCCCAGATTTCAAATGTCGTCAGGAAGCGTCCATCGCTCCTTTTAGCTAATCCCAACCCAACCATTTTGACAAGAAGCCTGGAGAAACAGATAATTCCTTCTTATAATTTCCTCAAAAGTGTGTTGCTGTCTGACGAGAAGGTTGCTTCTGCCTTGAAGCGCACGTCATGGATTTTTCTGGAAGACCATTCGAAGAAGCTCTTACCGAATATCTCTGTTCTGAGAGCAACAGGCGTGCCAGAATCATGCATTGCATTGTTGCTCGCTCATTTTCCTGAGACATTAATCCAAAAGAATGGCCAATTTGTAAATGCTGTCGAAGAGATTAAGGAAATGGGATTCGATCCAACCAAGTCGACATTCGTGTTAGCGATTCACGTAATGGCAGGTAATAAATCGATATACAATCGCTGTGTCGAGGTATACCAGAGGTGGGGTTGGTCAGAGGAGGAGATTCTAATGTCATTCAGAAAGCACCCGAATTGTATGCTTCTGTCGGAGGATAAAATAACGAAAGCAATGGACTTCCTCGTGAACAAGATGGGTTGGCCTTCGAGGATGATAGCGAGTTGCCCAGTGGTGTTGTTTTTCAGCTTGGAGAAGAGAATCAAACCGAGGTGTTCAGTTGTTCAGGCTCTGCGATTGAAGGGGTTGATCAAAAAGACTCTGAGCTTGTCTACTGTGTTGTTGCCGGACAAGAAACGTTTTGTGGAGAAGTTCGTGACCAAGTATGAGCATCAGGTGTCCGACTTGTGGAGTATCTATGAGATGAAAGTGGATTTTAAGAGCGTCATTTGA 1107 0.4472 METFQSPMMVNRTISCAFPSRQSKQIFGVSNSRLLFIFLNRSPPRPVSFKIEANNSNFTFSYLVGSCGLAPEAATSVSQKVQLHSSERPDSVLTLLREHGLSKSQISNVVRKRPSLLLANPNPTILTRSLEKQIIPSYNFLKSVLLSDEKVASALKRTSWIFLEDHSKKLLPNISVLRATGVPESCIALLLAHFPETLIQKNGQFVNAVEEIKEMGFDPTKSTFVLAIHVMAGNKSIYNRCVEVYQRWGWSEEEILMSFRKHPNCMLLSEDKITKAMDFLVNKMGWPSRMIASCPVVLFFSLEKRIKPRCSVVQALRLKGLIKKTLSLSTVLLPDKKRFVEKFVTKYEHQVSDLWSIYEMKVDFKSVI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3406 368 FunFam Mitochondrial transcription termination factor-like 130 351 - -
Prci3g3406 368 PANTHER CGI-12 PROTEIN-RELATED 57 126 IPR003690 GO:0003690|GO:0006355
Prci3g3406 368 Pfam mTERF 123 219 IPR003690 GO:0003690|GO:0006355
Prci3g3406 368 Pfam mTERF 235 339 IPR003690 GO:0003690|GO:0006355
Prci3g3406 368 Gene3D Transcription termination factor 3, mitochondrial 125 352 IPR038538 -
Prci3g3406 368 Gene3D Transcription termination factor 3, mitochondrial 69 124 IPR038538 -
Prci3g3406 368 SMART mt_12 114 147 IPR003690 GO:0003690|GO:0006355
Prci3g3406 368 SMART mt_12 256 287 IPR003690 GO:0003690|GO:0006355
Prci3g3406 368 SMART mt_12 152 183 IPR003690 GO:0003690|GO:0006355
Prci3g3406 368 SMART mt_12 188 218 IPR003690 GO:0003690|GO:0006355
Prci3g3406 368 SMART mt_12 288 322 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3406 Prci-Chr3 44492955 44494415 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Prci3g3406 mTERF 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3406 K15031 - qsu:112019279 436.802