Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3385 ATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGCGAATTTGGGAGTATTTCAAGGAAAGGATTTGAGGTTAAATTTGGGTATGGGATGAGATCGCGGTCACAGTCATACCGCGATGCTGGGGATCATGTGATGGTTGTCGATGGGTTGAGGCAGAGTTGTTGGGCTAATATGCCCCCGGAGCTTCTGAGGGACGTGCTAATGAGGATTGAGGCCTCTGAAGATACCTGGCCAACCCGAAGACATGTGGTTGCTTGTGCTGGTGTATGCCGCAGCTGGAGAGAAATCATTAAAGAAATTGTGAAATCTCCTGAATTATCTGGCAAGCTGACGCTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGAGCTCTCTTCTTCAGTGCTATATTAAACGGAATCGCAGTAATCAGACATATTATCTGTTCCTCAGTTTAAACCAAGCTTCAATTGATGAGGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCATACGGACTATATCATTTCTATAAACTTCGATGATGTATCTAGAGGGAGTAGCACTTACATTGGAAAGTTGAGGTCAAACTTTCTGGGTACCAAATTCACAGTGTATGATGCGCACCCTCCAATTTGCGGTGCCAGAGTGACTAAATCCCGTTCAACTAGACTAGTTAGTCTCAAGCAAGTTTCTCCTAGAGTTCCTGCTGGCAACTATCCCATTGCACATGTCTCATACGATCTGAATGTCCTGGGCTCCAGGGGCCCAAGGATAATGCATTGTGTCATGGATGCCATTCCAGCTTCAGCTGTTGAGCCAGGAGGTGTGGCCCCTACGCAAACTCAATTCCTGCATAGCAGACTTGATACTTCTTCTATTCCTTTCTTTAGATCAAAATCAACTCGCATGGAAAACTTCCAATCGGTACCTTTGTCTTCCCAAAACAAGGGAATGCTGGTATTACAAAATAAGTCCCCTAGGTGGCATGAGCAACTCCAATGCTGGTGTCTAAACTTCAACGGGCGAGTGACTGTGGCTTCTGTCAAAAACTTCCAGCTGGTTGCTTCTCCAAAGAGTGGGGTTTCTGAACAGGCTCAGGAAAATGTTATTCTTCAGTTTGGAAAAGTGGGGAAAGATTTGTTCACTATGGACTATCAGTATCCAATATCTGCTTTTGAAGCATTCGCAATATGTCTTAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1221 0.4521 MSFRSIIQDIKGEFGSISRKGFEVKFGYGMRSRSQSYRDAGDHVMVVDGLRQSCWANMPPELLRDVLMRIEASEDTWPTRRHVVACAGVCRSWREIIKEIVKSPELSGKLTLPISLKQPGPRSSLLQCYIKRNRSNQTYYLFLSLNQASIDEGKFLLAARKCRRPTHTDYIISINFDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGARVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRLDTSSIPFFRSKSTRMENFQSVPLSSQNKGMLVLQNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKSGVSEQAQENVILQFGKVGKDLFTMDYQYPISAFEAFAICLSSFDTKIACE 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3385 406 ProSitePatterns Tub family signature 2. 391 406 IPR018066 -
Prci3g3385 406 PANTHER TUBBY-RELATED 40 404 - -
Prci3g3385 406 PRINTS Tubby superfamily signature 336 352 IPR000007 -
Prci3g3385 406 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Prci3g3385 406 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Prci3g3385 406 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Prci3g3385 406 PRINTS Tubby superfamily signature 318 335 IPR000007 -
Prci3g3385 406 PRINTS Tubby superfamily signature 363 382 IPR000007 -
Prci3g3385 406 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Prci3g3385 406 FunFam Tubby-like F-box protein 112 406 - -
Prci3g3385 406 CDD F-box_AtTLP-like 55 99 - -
Prci3g3385 406 Gene3D Tubby Protein; Chain A 112 406 IPR025659 -
Prci3g3385 406 SUPERFAMILY Tubby C-terminal domain-like 104 406 IPR025659 -
Prci3g3385 406 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Prci3g3385 406 Pfam F-box domain 55 101 IPR001810 GO:0005515
Prci3g3385 406 Pfam Tub family 116 401 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3385 Prci-Chr3 44383385 44387650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3385 1 406 TUB Transcription Factor Family AT2G47900 73.902 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci3g3385 Tub 1.8e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3385 K19600 - gmx:100809257 711.835