LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci3g3379	ATGGCGGCGGAGGAGAAGGAAGTGAAAAAATCGAACGAGGAAAGAGTGAAGCTGTTTGTGGGTCAAGTGCCAAAGCATATAACCGAAGATGAGCTGCTTGCATTGTTCAAGGAGTTTGTTGCAGTGGACGAGATCAACATCATCAAGGATAAAGCCACTCGCGCTTCTCGAGGGTGTTGCTTTGTAATTTGTCCATCCCGAGAAGAGGCAGACAAGGCTGTTAATGCGTGTCATGATAAGAAAATGCTACCTTGGGCATCTAGACCCTTGCAGGTGAAGTATGCAGATGGCGAGATGGAAAGGCTAGAACACAAACTCTTCATTGGTATGCTTCCAAAGAATGTTTCTGAAGTTGAATTATCCGCTCTTTTCTCCATGCACGGAAACATAAAGGATTTGCATATTTTAAGAGGTTCCCAGCAGACAAATAAGGTTGCTCTTGTCCATTGTGAATTTGTGGTAGGTTGTGCATTTTTGAAGTATGAAACAAAAGAACAGGCCCTTGCTGCCCTGCAGGAAATCAATGGAAAGCATAAAATGAAGGGTTCAAGTGTACCTTTGGTTGTCAAGTGGGCAGATACTGAAAAGGTAAGGCAAGCTCGGAGGGCTCAGAAAGCAAAGTCCCAAACATCTAGGGTGCCACATCCTAATACTCATCATCCATCTCTATTTGGAGCCCTGCCAATGGGCTATGTTCCTCCACATAATGTATATGGTTATCAGGCTGCTGGGGGCTACAGGATTGTGTCCTACCGTTTGCCACCAATGCAGAACCAGCCTGGTTTCCATAATATGATGCCTCGCTTGAATCAAGTAAATGCATTGCAGCCTAATCTTGGCCCTAATATGAGCCCTAGGGATTATCCCCTGCGTCATGCAAATTATGTTGGTTCTTACACTGCAGTACCAGCTCTACAGCATCCATATCCTGGAAGAATGATAGGTCCAAGGCATTTGAGTAGTTCCTGTCCTGCGTGGAACAGTGACTCTGCTACCTCTTCAGGGGGCAGTCAAGTTTCCAAAAGTCAGGTTGAAGGACCGCCGGGTGCCAATCTCTTTATTTATCACATACCTCAAGAATTTGGTGATGAAGAGCTTGCAATATACTTTCAACCATTTGGTAGTGTTTTGAGTGCTAAGGTTTTTGTTGATAAAACAGCTGGTGCAAGCAAATGTTTTGGATTTGTGAGCTATGAATCTCCAGAAGCAGCTGAAGCAGCTACTAGGAGGATGAATGGATGCGAGTTAGGTGGTAAGAAAATGAAGGTTCAGCTTAAGAGGGACAACAAACTGAGGAAGCCTTACGGACGATGA	1314	0.4475	MAAEEKEVKKSNEERVKLFVGQVPKHITEDELLALFKEFVAVDEINIIKDKATRASRGCCFVICPSREEADKAVNACHDKKMLPWASRPLQVKYADGEMERLEHKLFIGMLPKNVSEVELSALFSMHGNIKDLHILRGSQQTNKVALVHCEFVVGCAFLKYETKEQALAALQEINGKHKMKGSSVPLVVKWADTEKVRQARRAQKAKSQTSRVPHPNTHHPSLFGALPMGYVPPHNVYGYQAAGGYRIVSYRLPPMQNQPGFHNMMPRLNQVNALQPNLGPNMSPRDYPLRHANYVGSYTAVPALQHPYPGRMIGPRHLSSSCPAWNSDSATSSGGSQVSKSQVEGPPGANLFIYHIPQEFGDEELAIYFQPFGSVLSAKVFVDKTAGASKCFGFVSYESPEAAEAATRRMNGCELGGKKMKVQLKRDNKLRKPYGR	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci3g3379	437	Gene3D	-	2	100	IPR012677	-
	Prci3g3379	437	PANTHER	RNA BINDING PROTEIN	370	413	-	-
	Prci3g3379	437	FunFam	Sex lethal, isoform D	332	429	-	-
	Prci3g3379	437	Gene3D	-	101	202	IPR012677	-
	Prci3g3379	437	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	352	422	IPR000504	GO:0003723
	Prci3g3379	437	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	106	181	IPR000504	GO:0003723
	Prci3g3379	437	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	18	81	IPR000504	GO:0003723
	Prci3g3379	437	MobiDBLite	consensus disorder prediction	325	344	-	-
	Prci3g3379	437	Gene3D	-	320	427	IPR012677	-
	Prci3g3379	437	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	350	428	IPR000504	GO:0003723
	Prci3g3379	437	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	104	194	IPR000504	GO:0003723
	Prci3g3379	437	FunFam	RNA-binding protein BRN1	3	100	-	-
	Prci3g3379	437	SUPERFAMILY	RNA-binding domain, RBD	15	138	IPR035979	GO:0003676
	Prci3g3379	437	SMART	rrm1_1	17	93	IPR000504	GO:0003723
	Prci3g3379	437	SMART	rrm1_1	351	424	IPR000504	GO:0003723
	Prci3g3379	437	SMART	rrm1_1	105	190	IPR000504	GO:0003723
	Prci3g3379	437	CDD	RRM3_CELF1-6	352	424	-	-
	Prci3g3379	437	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	16	97	IPR000504	GO:0003723
	Prci3g3379	437	SUPERFAMILY	RNA-binding domain, RBD	104	431	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci3g3379	Prci-Chr3	44353269	44358618	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci3g3379	350	436	Eukaryotic Initiation Factors Gene Family	AT1G71770	34.831	2.59e-08	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci3g3379	K13207		-	gmx:100813239	635.95