Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3378 ATGGCGGCGGAGGAGAAGGAAGTGAAAAAATCGAACGAGGAAAGAGTGAAGCTGTTTGTGGGTCAAGTGCCAAAGCATATAACCGAAGATGAGCTGCTTGCATTGTTCAAGGAGTTTGTTGCAGTGGACGAGATCAACATCATCAAGGATAAAGCCACTCGCGCTTCTCGAGGGTGTTGCTTTGTAATTTGTCCATCCCGAGAAGAGGCAGACAAGGCTGTTAATGCGTGTCATGATAAGAAAATGCTACCTTGGGCATCTAGACCCTTGCAGGTGAAGTATGCAGATGGCGAGATGGAAAGGCTAGAACACAAACTCTTCATTGGTATGCTTCCAAAGAATGTTTCTGAAGTTGAATTATCCGCTCTTTTCTCCATGCACGGAAACATAAAGGATTTGCATATTTTAAGAGGTTCCCAGCAGACAAATAAGGGTTGTGCATTTTTGAAGTATGAAACAAAAGAACAGGCCCTTGCTGCCCTGCAGGAAATCAATGGAAAGCATAAAATGAAGGGTTCAAGTGTACCTTTGGTTGTCAAGTGGGCAGATACTGAAAAGGTAAGGCAAGCTCGGAGGGCTCAGAAAGCAAAGTCCCAAACATCTAGGGTGCCACATCCTAATACTCATCATCCATCTCTATTTGGAGCCCTGCCAATGGGCTATGTTCCTCCACATAATGTATATGGTTATCAGGCTGCTGGGGGCTACAGGATTGTGTCCTACCGTTTGCCACCAATGCAGAACCAGCCTGGTTTCCATAATATGATGCCTCGCTTGAATCAAGTAAATGCATTGCAGCCTAATCTTGGCCCTAATATGAGCCCTAGGGATTATCCCCTGCGTCATGCAAATTATGTTGGTTCTTACACTGCAGTACCAGCTCTACAGCATCCATATCCTGGAAGAATGATAGGTCCAAGGCATTTGAGTAGTTCCTGTCCTGCGTGGAACAGTGACTCTGCTACCTCTTCAGGGGGCAGTCAAGTTTCCAAAAGTCAGGTTGAAGGACCGCCGGGTGCCAATCTCTTTATTTATCACATACCTCAAGAATTTGGTGATGAAGAGCTTGCAATATACTTTCAACCATTTGGTAGTGTTTTGAGTGCTAAGGTTTTTGTTGATAAAACAGCTGGTGCAAGCAAATGTTTTGGATTTGTGAGCTATGAATCTCCAGAAGCAGCTGAAGCAGCTACTAGGAGGATGAATGGATGCGAGTTAGGTGGTAAGAAAATGAAGGTTCAGCTTAAGAGGGACAACAAACTGAGGAAGCCTTACGGACGATGA 1284 0.4486 MAAEEKEVKKSNEERVKLFVGQVPKHITEDELLALFKEFVAVDEINIIKDKATRASRGCCFVICPSREEADKAVNACHDKKMLPWASRPLQVKYADGEMERLEHKLFIGMLPKNVSEVELSALFSMHGNIKDLHILRGSQQTNKGCAFLKYETKEQALAALQEINGKHKMKGSSVPLVVKWADTEKVRQARRAQKAKSQTSRVPHPNTHHPSLFGALPMGYVPPHNVYGYQAAGGYRIVSYRLPPMQNQPGFHNMMPRLNQVNALQPNLGPNMSPRDYPLRHANYVGSYTAVPALQHPYPGRMIGPRHLSSSCPAWNSDSATSSGGSQVSKSQVEGPPGANLFIYHIPQEFGDEELAIYFQPFGSVLSAKVFVDKTAGASKCFGFVSYESPEAAEAATRRMNGCELGGKKMKVQLKRDNKLRKPYGR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3378 427 MobiDBLite consensus disorder prediction 315 334 - -
Prci3g3378 427 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Prci3g3378 427 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Prci3g3378 427 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Prci3g3378 427 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Prci3g3378 427 CDD RRM3_CELF1-6 342 414 - -
Prci3g3378 427 FunFam RNA-binding protein BRN1 isoform X1 101 193 - -
Prci3g3378 427 FunFam Sex lethal, isoform D 322 419 - -
Prci3g3378 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 412 IPR000504 GO:0003723
Prci3g3378 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 171 IPR000504 GO:0003723
Prci3g3378 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 81 IPR000504 GO:0003723
Prci3g3378 427 Gene3D - 100 192 IPR012677 -
Prci3g3378 427 FunFam RNA-binding protein BRN1 3 100 - -
Prci3g3378 427 Gene3D - 310 417 IPR012677 -
Prci3g3378 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Prci3g3378 427 PANTHER RNA BINDING PROTEIN 16 418 - -
Prci3g3378 427 SUPERFAMILY RNA-binding domain, RBD 10 100 IPR035979 GO:0003676
Prci3g3378 427 Gene3D - 2 99 IPR012677 -
Prci3g3378 427 SMART rrm1_1 105 180 IPR000504 GO:0003723
Prci3g3378 427 SMART rrm1_1 341 414 IPR000504 GO:0003723
Prci3g3378 427 SMART rrm1_1 17 93 IPR000504 GO:0003723
Prci3g3378 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Prci3g3378 427 SUPERFAMILY RNA-binding domain, RBD 104 421 IPR035979 GO:0003676
Prci3g3378 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 340 418 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3378 Prci-Chr3 44353269 44358618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3378 340 426 Eukaryotic Initiation Factors Gene Family AT1G71770 34.831 2.37e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3378 K13207 - gmx:100813239 644.039