Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3377 ATGAGCTGCTTGCATTGTTCAAGGAGTTTGTTGCAGTGGACGAGATCAACATCATCAAGGATAAAGCCACTCGCGCTTCTCGAGGCATCTAGACCCTTGCAGGTGAAGTATGCAGATGGCGAGATGGAAAGGCTAGAACACAAACTCTTCATTGGTATGCTTCCAAAGAATGTTTCTGAAGTTGAATTATCCGCTCTTTTCTCCATGCACGGAAACATAAAGGATTTGCATATTTTAAGAGGTTCCCAGCAGACAAATAAGGTTGCTCTTGTCCATTGTGAATTTGTGGTAGGTTGTGCATTTTTGAAGTATGAAACAAAAGAACAGGCCCTTGCTGCCCTGCAGGAAATCAATGGAAAGCATAAAATGAAGGGTTCAAGTGTACCTTTGGTTGTCAAGTGGGCAGATACTGAAAAGGTAAGGCAAGCTCGGAGGGCTCAGAAAGCAAAGTCCCAAACATCTAGGGTGCCACATCCTAATACTCATCATCCATCTCTATTTGGAGCCCTGCCAATGGGCTATGTTCCTCCACATAATGTATATGGTTATCAGGCTGCTGGGGGCTACAGGATTGTGTCCTACCGTTTGCCACCAATGCAGAACCAGCCTGGTTTCCATAATATGATGCCTCGCTTGAATCAAGTAAATGCATTGCAGCCTAATCTTGGCCCTAATATGAGCCCTAGGGATTATCCCCTGCGTCATGCAAATTATGTTGGTTCTTACACTGCAGTACCAGCTCTACAGCATCCATATCCTGGAAGAATGATAGGTCCAAGGCATTTGAGTAGTTCCTGTCCTGCGTGGAACAGTGACTCTGCTACCTCTTCAGGGGGCAGTCAAGTTTCCAAAAGTCAGGTTGAAGGACCGCCGGGTGCCAATCTCTTTATTTATCACATACCTCAAGAATTTGGTGATGAAGAGCTTGCAATATACTTTCAACCATTTGGTAGTGTTTTGAGTGCTAAGGTTTTTGTTGATAAAACAGCTGGTGCAAGCAAATGTTTTGGATTTGTGAGCTATGAATCTCCAGAAGCAGCTGAAGCAGCTACTAGGAGGATGAATGGATGCGAGTTAGGTGGTAAGAAAATGAAGGTTCAGCTTAAGAGGGACAACAAACTGAGGAAGCCTTACGGACGATGA 1143 0.4453 MSCLHCSRSLLQWTRSTSSRIKPLALLEASRPLQVKYADGEMERLEHKLFIGMLPKNVSEVELSALFSMHGNIKDLHILRGSQQTNKVALVHCEFVVGCAFLKYETKEQALAALQEINGKHKMKGSSVPLVVKWADTEKVRQARRAQKAKSQTSRVPHPNTHHPSLFGALPMGYVPPHNVYGYQAAGGYRIVSYRLPPMQNQPGFHNMMPRLNQVNALQPNLGPNMSPRDYPLRHANYVGSYTAVPALQHPYPGRMIGPRHLSSSCPAWNSDSATSSGGSQVSKSQVEGPPGANLFIYHIPQEFGDEELAIYFQPFGSVLSAKVFVDKTAGASKCFGFVSYESPEAAEAATRRMNGCELGGKKMKVQLKRDNKLRKPYGR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3377 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Prci3g3377 380 CDD RRM3_CELF1-6 295 367 - -
Prci3g3377 380 PANTHER RNA BINDING PROTEIN 36 371 - -
Prci3g3377 380 SMART rrm1_1 48 133 IPR000504 GO:0003723
Prci3g3377 380 SMART rrm1_1 294 367 IPR000504 GO:0003723
Prci3g3377 380 MobiDBLite consensus disorder prediction 268 287 - -
Prci3g3377 380 Gene3D - 41 145 IPR012677 -
Prci3g3377 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 365 IPR000504 GO:0003723
Prci3g3377 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 124 IPR000504 GO:0003723
Prci3g3377 380 SUPERFAMILY RNA-binding domain, RBD 47 374 IPR035979 GO:0003676
Prci3g3377 380 Gene3D - 262 370 IPR012677 -
Prci3g3377 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 137 IPR000504 GO:0003723
Prci3g3377 380 FunFam Sex lethal, isoform D 275 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3377 Prci-Chr3 44353269 44358619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3377 290 378 Eukaryotic Initiation Factors Gene Family AT1G22760 37.234 4.41e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3377 K13207 - gmx:100813239 498.819