Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3376 ATGAGCTGCTTGCATTGTTCAAGGAGTTTGTTGCAGTGGACGAGATCAACATCATCAAGGATAAAGCCACTCGCGCTTCTCGAGACTAGTCAGAGCAGAGATTCCTTGAGTTTGAGCTTCTGTTACAGCATTCCAACCCCAATCTCGTGGGTTTTGGTTGCAGGGTGTTGCTTTGTAATTTGTCCATCCCGAGAAGAGGCAGACAAGGCTGTTAATGCGTGTCATGATAAGAAAATGCTACCTTGGGCATCTAGACCCTTGCAGGTGAAGTATGCAGATGGCGAGATGGAAAGGCTAGAACACAAACTCTTCATTGGTATGCTTCCAAAGAATGTTTCTGAAGTTGAATTATCCGCTCTTTTCTCCATGCACGGAAACATAAAGGATTTGCATATTTTAAGAGGTTCCCAGCAGACAAATAAGGTTGCTCTTGTCCATTGTGAATTTGTGGTAGGTTGTGCATTTTTGAAGTATGAAACAAAAGAACAGGCCCTTGCTGCCCTGCAGGAAATCAATGGAAAGCATAAAATGAAGGGTTCAAGTGTACCTTTGGTTGTCAAGTGGGCAGATACTGAAAAGGTAAGGCAAGCTCGGAGGGCTCAGAAAGCAAAGTCCCAAACATCTAGGGTGCCACATCCTAATACTCATCATCCATCTCTATTTGGAGCCCTGCCAATGGGCTATGTTCCTCCACATAATGTATATGGTTATCAGGCTGCTGGGGGCTACAGGATTGTGTCCTACCGTTTGCCACCAATGCAGAACCAGCCTGGTTTCCATAATATGATGCCTCGCTTGAATCAAGTAAATGCATTGCAGCCTAATCTTGGCCCTAATATGAGCCCTAGGGATTATCCCCTGCGTCATGCAAATTATGTTGGTTCTTACACTGCAGTACCAGCTCTACAGCATCCATATCCTGGAAGAATGATAGGTCCAAGGCATTTGAGTAGTTCCTGTCCTGCGTGGAACAGTGACTCTGCTACCTCTTCAGGGGGCAGTCAAGTTTCCAAAAGTCAGGTTGAAGGACCGCCGGGTGCCAATCTCTTTATTTATCACATACCTCAAGAATTTGGTGATGAAGAGCTTGCAATATACTTTCAACCATTTGGTAGTGTTTTGAGTGCTAAGGTTTTTGTTGATAAAACAGCTGGTGCAAGCAAATGTTTTGGATTTGTGAGCTATGAATCTCCAGAAGCAGCTGAAGCAGCTACTAGGAGGATGAATGGATGCGAGTTAGGTGGTAAGAAAATGAAGGTTCAGCTTAAGAGGGACAACAAACTGAGGAAGCCTTACGGACGATGA 1305 0.4467 MSCLHCSRSLLQWTRSTSSRIKPLALLETSQSRDSLSLSFCYSIPTPISWVLVAGCCFVICPSREEADKAVNACHDKKMLPWASRPLQVKYADGEMERLEHKLFIGMLPKNVSEVELSALFSMHGNIKDLHILRGSQQTNKVALVHCEFVVGCAFLKYETKEQALAALQEINGKHKMKGSSVPLVVKWADTEKVRQARRAQKAKSQTSRVPHPNTHHPSLFGALPMGYVPPHNVYGYQAAGGYRIVSYRLPPMQNQPGFHNMMPRLNQVNALQPNLGPNMSPRDYPLRHANYVGSYTAVPALQHPYPGRMIGPRHLSSSCPAWNSDSATSSGGSQVSKSQVEGPPGANLFIYHIPQEFGDEELAIYFQPFGSVLSAKVFVDKTAGASKCFGFVSYESPEAAEAATRRMNGCELGGKKMKVQLKRDNKLRKPYGR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3376 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 178 IPR000504 GO:0003723
Prci3g3376 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 419 IPR000504 GO:0003723
Prci3g3376 434 PANTHER RNA BINDING PROTEIN 55 425 - -
Prci3g3376 434 Gene3D - 18 96 IPR012677 -
Prci3g3376 434 FunFam Sex lethal, isoform D 329 426 - -
Prci3g3376 434 Gene3D - 97 199 IPR012677 -
Prci3g3376 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 191 IPR000504 GO:0003723
Prci3g3376 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 425 IPR000504 GO:0003723
Prci3g3376 434 CDD RRM3_CELF1-6 349 421 - -
Prci3g3376 434 SUPERFAMILY RNA-binding domain, RBD 101 428 IPR035979 GO:0003676
Prci3g3376 434 MobiDBLite consensus disorder prediction 322 341 - -
Prci3g3376 434 SMART rrm1_1 102 187 IPR000504 GO:0003723
Prci3g3376 434 SMART rrm1_1 348 421 IPR000504 GO:0003723
Prci3g3376 434 Gene3D - 317 424 IPR012677 -
Prci3g3376 434 SUPERFAMILY RNA-binding domain, RBD 50 99 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3376 Prci-Chr3 44353269 44358620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3376 344 432 Eukaryotic Initiation Factors Gene Family AT1G22760 37.234 8.31e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3376 K13207 - gmx:100813239 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2243 1 43028781 43033883 Prci3g3376 3 44353269 44358620 CCT
Prci3g3376 3 44353269 44358620 Prci3g3376 3 44353269 44358620 ECH