Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3375 ATGGCGGCGGAGGAGAAGGAAGTGAAAAAATCGAACGAGGAAAGAGTGAAGCTGTTTGTGGGTCAAGTGCCAAAGCATATAACCGAAGATGAGCTGCTTGCATTGTTCAAGGAGTTTGTTGCAGTGGACGAGATCAACATCATCAAGGATAAAGCCACTCGCGCTTCTCGAGGGTGTTGCTTTGTAATTTGTCCATCCCGAGAAGAGGCAGACAAGGCTGTTAATGCGTGTCATGATAAGAAAATGCTACCTTGGGCATCTAGACCCTTGCAGGTGAAGTATGCAGATGGCGAGATGGAAAGGCTAGAACACAAACTCTTCATTGGTATGCTTCCAAAGAATGTTTCTGAAGTTGAATTATCCGCTCTTTTCTCCATGCACGGAAACATAAAGGATTTGCATATTTTAAGAGGTTCCCAGCAGACAAATAAGGTTGCTCTTGTCCATTGTGAATTTGTGGTAGGTTGTGCATTTTTGAAGTATGAAACAAAAGAACAGGCCCTTGCTGCCCTGCAGGAAATCAATGGAAAGCATAAAATGAAGGGTTCAAGTGTACCTTTGGTTGTCAAGTGGGCAGATACTGAAAAGGTAAGGCAAGCTCGGAGGGCTCAGAAAGCAAAGTCCCAAACATCTAGGGTGCCACATCCTAATACTCATCATCCATCTCTATTTGGAGCCCTGCCAATGGGCTATGTTCCTCCACATAATGTATATGGTTATCAGGCTGCTGGGGGCTACAGGATTGTGTCCTACCGTTTGCCACCAATGCAGAACCAGCCTGGTTTCCATAATATGATGCCTCGCTTGAATCAAGTAAATGCATTGCAGCCTAATCTTGGCCCTAATATGAGCCCTAGGGATTATCCCCTGCGTCATGCAAATTATGTTGGTTCTTACACTGCAGTACCAGCTCTACAGCATCCATATCCTGGAAGAATGATAGGTCCAAGGCATTTGAGTAGTTCCTGTCCTGCGTGGAACAGTGACTCTGCTACCTCTTCAGGGGGCAGTCAAGTTTCCAAAAGTCAGGTTGAAGGACCGCCGGGTGCCAATCTCTTTATTTATCACATACCTCAAGAATTTGGTGATGAAGAGCTTGCAATATACTTTCAACCATTTGGTAGTGTTTTGAGTGCTAAGGTTTTTGTTGATAAAACAGCTGGTGCAAGCAAATGTTTTGGTGGTGGTGTTTGCAGGATTTGTGAGCTATGA 1212 0.4472 MAAEEKEVKKSNEERVKLFVGQVPKHITEDELLALFKEFVAVDEINIIKDKATRASRGCCFVICPSREEADKAVNACHDKKMLPWASRPLQVKYADGEMERLEHKLFIGMLPKNVSEVELSALFSMHGNIKDLHILRGSQQTNKVALVHCEFVVGCAFLKYETKEQALAALQEINGKHKMKGSSVPLVVKWADTEKVRQARRAQKAKSQTSRVPHPNTHHPSLFGALPMGYVPPHNVYGYQAAGGYRIVSYRLPPMQNQPGFHNMMPRLNQVNALQPNLGPNMSPRDYPLRHANYVGSYTAVPALQHPYPGRMIGPRHLSSSCPAWNSDSATSSGGSQVSKSQVEGPPGANLFIYHIPQEFGDEELAIYFQPFGSVLSAKVFVDKTAGASKCFGGGVCRICEL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3375 403 Gene3D - 2 100 IPR012677 -
Prci3g3375 403 MobiDBLite consensus disorder prediction 325 344 - -
Prci3g3375 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 194 IPR000504 GO:0003723
Prci3g3375 403 SMART rrm1_1 17 93 IPR000504 GO:0003723
Prci3g3375 403 SMART rrm1_1 105 190 IPR000504 GO:0003723
Prci3g3375 403 SMART rrm1_1 351 401 IPR000504 GO:0003723
Prci3g3375 403 FunFam RNA-binding protein BRN1 3 100 - -
Prci3g3375 403 SUPERFAMILY RNA-binding domain, RBD 15 138 IPR035979 GO:0003676
Prci3g3375 403 Gene3D - 101 202 IPR012677 -
Prci3g3375 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 181 IPR000504 GO:0003723
Prci3g3375 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 81 IPR000504 GO:0003723
Prci3g3375 403 Gene3D - 320 395 IPR012677 -
Prci3g3375 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Prci3g3375 403 PANTHER RNA BINDING PROTEIN 16 383 - -
Prci3g3375 403 SUPERFAMILY RNA-binding domain, RBD 104 394 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3375 Prci-Chr3 44353269 44358623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3375 16 241 Eukaryotic Initiation Factors Gene Family AT1G71770 27.099 3.74e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3375 K13207 - gmx:100813239 572.778