Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3336 ATGAACATCCCCAGGGTAATGAGCAGAAATGTAACACAACCCCAGATCAATAGTCCTTCCAGCGGTCGAAAATTGAATCCGATCAAGCTTCCACGGCAGAAAGAGAAGGTAGTGGTGGTCATGGGAGCCACCGGCACCGGAAAGTCCAGGCTCTCCATCGACCTCGCCACCGTTTTTCATGCACAGATCATCAACTCCGACAAAATGCAAGTCTACGAAGGCCTCGACATAGTCACCAACAAAATCACCAAGGAAGACCGGCGAGGGGTGCCTCACCATTTGTTAGGAACAGAGAGCCCCTACTCAGAGTTTACAGCCTCCCATTTCCGTGACGCGGCTTTACTTGCCATCGAGTCAATTACGTCTTGCGGACAGCTTCCGATCATCGTAGGAGGATCCAACTCGTATATTGAGGCACTAATCGACGACTATGACTACAAATTCCGATCTAGGTATGATTTCTGTTGTCTCTCTGTAGATGTGTCAATGCCCGTACTCGATCAATATGTGGCCAAACGGGTTGATCAGATGTTGGAGAATGGAATGGTGGATGAGCTGAGACCACTTTTCAATCCAAAGGGCGACTACTCGCGAGGGATTAGAAAAGCTATTGGAGTTCCTGAGTTCGATCAGTATTTTCGAAAGGAATCGTTTATCATGGATGAAGGAATCAAGCAAAGGTTAGTGGAGGAAGCGGTGAATGAAATGAAGAAGAACACGTACAAATTGGCACGTAAACAATTGGGGAAGATTCACAGGCTGCACAACGTGAAGAGATGGAAAATTCAACGGCTAAACGCGACAACCGTGTTCTGCAAGCATGGGGAAGAAGCAGAGGAGGCGTGGAAGAAAAAGGTGGCAGAGCCGAGTGCGAGGATGGTCGCCAGGTTTCTTTTCGATTTTCCCTCTGCGAACGTTGGCGCTGGCCTTAGACTATGCTCACCATCGGCCCTGAGAAGCGCCATGGCGACGGCAACGTGCGACGGCTACGTGCTGACTGCTGGATACCCACGTCTCTCCATCTTCTGA 1029 0.4966 MNIPRVMSRNVTQPQINSPSSGRKLNPIKLPRQKEKVVVVMGATGTGKSRLSIDLATVFHAQIINSDKMQVYEGLDIVTNKITKEDRRGVPHHLLGTESPYSEFTASHFRDAALLAIESITSCGQLPIIVGGSNSYIEALIDDYDYKFRSRYDFCCLSVDVSMPVLDQYVAKRVDQMLENGMVDELRPLFNPKGDYSRGIRKAIGVPEFDQYFRKESFIMDEGIKQRLVEEAVNEMKKNTYKLARKQLGKIHRLHNVKRWKIQRLNATTVFCKHGEEAEEAWKKKVAEPSARMVARFLFDFPSANVGAGLRLCSPSALRSAMATATCDGYVLTAGYPRLSIF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3336 342 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 262 - -
Prci3g3336 342 Gene3D - 34 298 IPR027417 -
Prci3g3336 342 MobiDBLite consensus disorder prediction 1 27 - -
Prci3g3336 342 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 262 - -
Prci3g3336 342 Pfam IPP transferase 70 144 - -
Prci3g3336 342 Pfam IPP transferase 149 248 - -
Prci3g3336 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 145 IPR027417 -
Prci3g3336 342 Hamap tRNA dimethylallyltransferase [miaA]. 37 287 IPR018022 GO:0008033
Prci3g3336 342 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 298 IPR039657 -
Prci3g3336 342 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3336 Prci-Chr3 44119936 44121472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3336 150 298 C2H2 Transcription Factor Family AT2G27760 30.857 3.72e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3336 K10760 - gmx:100803964 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2287 1 43462169 43464740 Prci3g3336 3 44119936 44121472 CCT
Prci3g3336 3 44119936 44121472 Prci3g3336 3 44119936 44121472 ECH