Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3330 ATGGCTGCTCCCCTCCCTACCAGGTTTCAAACCCTTCTGCAGGCCGCCGTGCAGTCAGTTCATTGGACTTATAGCCTTTTCTGGCAACTTTGTCCCCAGCAAGGGATTCTGGTGTGGGCCGATGGTTACTACAATGGGGCAATTAAGACTCGGAAAACAGTGCAGCCAATGGAAGTTAGTGCCGAGGAAGCTTCTCTCCAGAGAAGCCAGCAACTCAGGGAGCTCTACGAATCATTATCCGCCGGAGAGACCAACCCTCCTGCACGACGGCCTTGTGCTGCCTTGTCGCCGGAGGACCTGACCGAATCCGAATGGTTCTACTTGATGTGCGTCTCTTTCTCCTTTCCTCCTGGCATCGGATTACCGGGAAAAGCATATGCGAGAAGGCAGCATGTATGGCTTGCCGGAGCAAACGAGGTGGACAGCAAAACGTTTTCAAGAGCTATTCTTGCCAAGAGTGCTCGCATACAGACCGTGGTGTGCATTCCTCTAATGGACGGCGTGGTAGAGTTGGGCACAACAGATAAGGTTCAAGAAGACCTTAATTTTATCCAACATGTGAAGAGCTTCTTCATAGACCACCAGCGGCAGCACCACCCTCCTCCGCCAAAGCCCGCCCTCTCCGAGCACTCTACTTCCAACCCCACCACCTCTTCCGACCACTCCCGCTTCCATTCCGCCCCCATCCCCACTGCCATGTACTCCGCCGTGGACCCATCACCCGCCACCCCAGCTGCTCCCAACAACCACATGAATGAAGATGACGAGGAGGATGATGAAGAAGAAGCTGACTCCGATTCTGAGGCGGAAACGGCCCGCAACAGCCGCCCAACGTCTACACCGAATGCTTCAGGTGTGCCAGCAGCTACTGCAGCAGAACCGAGCGAGTTAATGCAGCTGGAGATGTCGGAGGATATCCGGGTGGGATCACCGGACGATGGCTCCAACAACCTCGACTCAGATTTCCATATGCTAGCGGTGAGCCACCCAACGGATCACGTACCGAGCCGAGTAGACTCGTACCGGGCCGAGTCGACCCGGAGATGGGTTGATCCAGTGCTTCAACTACCAGCTCCAGAAGGCGGTCAACTAGAAGACCTCACACAAGAGGACACCCACTACTCTCAAACAGTGTCTACCATTCTCCACAACCAGTCTATTCGGTGGGCCGAGTCACCCTCCGTCGAGTGCATAACTTACTCCTCTCAGTCGGCTTTTGCCAAGTGGAGTACCCGTGCCGACCACCACCACCACCACCACCTCCACGTGTCCGCCGACGGGACCTCTCAGTGGCTCCTCAAGTACATTCTGTTCACAGTTCCTTTCCTTCACGCCAAGTACCAAGACGACAACTCGCCCACGCCCCGGGATGGCAACGATCCCGTCACGCGCCTCCGTGGAAAGGGAACACCGCAGGATGAGCTAAGCGCAAACCACGTGCTGGCGGAGCGACGCCGCCGCGAGAAGCTCAACGAGAGGTTCATTATACTGAGATCGCTTGTGCCCTTCGTCACCAAAATGGACAAAGCATCGATATTAGGAGACACCATCGAGTACGTGAAGCAGCTGCGTAAAAAGATCCAGGATCTGGAGGCTCGTAACCGCCAGATGGAAGTAGAACAACAGTCAAAGGAGCAACCGAGGAGCTTGGCGAGACCGGGGCCGGACAAGAGGAAGATGAGGATCCTGGAGGGGAGCGGAGGGATGAGGAAGCCGAAGACAGTGGAGGAGTCACCGCCGTCATCGCCGTCGGGAGTGGTGACGTCAGTGCAAGTGTCGATCATAGAGAGCGACGCGCTGCTGGAGCTGGAATGCGAGAACAGGGAAGGGTTGTTGCTGGACGTGATGCAAATGCTGAGAGAGATGAGGATAGAGGTGACGACGGTGCAGTCATCACTGAACAACGGGGTGTTCATGGCGGAGCTGAGGGCGAAGGTGAAGGAAAATCCGAACGGAAAGAAGACCAGCATAGTTGAAGTGAAAAGGGCCCTCAACCAAATCATACCCCACAATGATTGA 2019 0.5567 MAAPLPTRFQTLLQAAVQSVHWTYSLFWQLCPQQGILVWADGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPARRPCAALSPEDLTESEWFYLMCVSFSFPPGIGLPGKAYARRQHVWLAGANEVDSKTFSRAILAKSARIQTVVCIPLMDGVVELGTTDKVQEDLNFIQHVKSFFIDHQRQHHPPPPKPALSEHSTSNPTTSSDHSRFHSAPIPTAMYSAVDPSPATPAAPNNHMNEDDEEDDEEEADSDSEAETARNSRPTSTPNASGVPAATAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHMLAVSHPTDHVPSRVDSYRAESTRRWVDPVLQLPAPEGGQLEDLTQEDTHYSQTVSTILHNQSIRWAESPSVECITYSSQSAFAKWSTRADHHHHHHLHVSADGTSQWLLKYILFTVPFLHAKYQDDNSPTPRDGNDPVTRLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEARNRQMEVEQQSKEQPRSLARPGPDKRKMRILEGSGGMRKPKTVEESPPSSPSGVVTSVQVSIIESDALLELECENREGLLLDVMQMLREMRIEVTTVQSSLNNGVFMAELRAKVKENPNGKKTSIVEVKRALNQIIPHND 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3330 672 MobiDBLite consensus disorder prediction 252 267 - -
Prci3g3330 672 Pfam Helix-loop-helix DNA-binding domain 477 524 IPR011598 GO:0046983
Prci3g3330 672 MobiDBLite consensus disorder prediction 209 225 - -
Prci3g3330 672 Coils Coil 513 540 - -
Prci3g3330 672 PANTHER TRANSCRIPTION FACTOR TT8 7 670 - -
Prci3g3330 672 MobiDBLite consensus disorder prediction 534 585 - -
Prci3g3330 672 SMART finulus 480 529 IPR011598 GO:0046983
Prci3g3330 672 MobiDBLite consensus disorder prediction 194 290 - -
Prci3g3330 672 MobiDBLite consensus disorder prediction 550 566 - -
Prci3g3330 672 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 191 IPR025610 -
Prci3g3330 672 MobiDBLite consensus disorder prediction 448 476 - -
Prci3g3330 672 Gene3D - 475 548 IPR036638 GO:0046983
Prci3g3330 672 MobiDBLite consensus disorder prediction 272 286 - -
Prci3g3330 672 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 474 523 IPR011598 GO:0046983
Prci3g3330 672 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 476 546 IPR036638 GO:0046983
Prci3g3330 672 Gene3D - 598 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3330 Prci-Chr3 44068381 44074373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3330 307 671 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.811 5.59e-60 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g3330 bHLH-MYC_N 1.4e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3330 - - cave:132168753 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g3330 3 44068381 44074373 Prci3g3330 3 44068381 44074373 ECH