Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3289 ATGGATTACCCGTATACAGTGAAAGAAGAGTACCTGGAAGCGTCCTCATCTCATTCAAGAGGTGAAGTGCCAACAATTTCCCCACCACAGCCAATAGAGGGGCTTCACGAGCTTGGCCCGCCGCCATTTCTCACCAAGACGTTCGACGTGGTGGATGACCCAGCTACCAATCATATGGTTTCTTGGAGCAGAGTGGGCACTAGTTTTGTTGTATGGGATCCACATGCCTTCTCTGTGAGTCTCCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTGAACACTTATGGATTTAGGAAAATTGATCCAGATAGATGGGAGTTCGCAAATGAAGGATTTCTGAGAGGCCACAGGCATCTTCTGAGAAACATAAGGAGAAGGAAGGCACCTGCTAATGTGAGTCTTTCTCAACAAGCACAACAGCAAGGTCATTGTGTTGAAGTAGGAAGGTTTGGACTGGACGAAGAAATTGACCGTTTGAAGCGAGACAAGCAGGTGCTAATGATGGAGCTGGTGAGACTTAGGCAACAGCAACAGAACACTAGATCATACCTTCAGGCAATGGAACAAAGGTTACAAGGCACGGAAAAAAAACAGCAACAAATGATGGCTTTCTTAGCCAGAGCTATGAAAAATCCAGCCTTTCTCCAGCAACTACTCCAACAGAAAGAAAAGAGAAAGGAGCTTGAAGAAGCCATAACTAAGAAGAGAAGAAGACCAATTGAGCAAGGACCAAATTGTGTTGGTGAATCAAGCAGTGGAGTTGAAGCAATAAACCCTATAAAAGCCGAGCCTTTAGAATTTAGCAACTACGGGTTTGAAGTGTCGGAACTGGAAGTGTTAGCTTTGGAAATGCAGGGTTATGGTAGAGGAAGAAGAGAACAGGAGGCGCCAGAAGAACCACGGGAGAGGCTGGGAAAAGAACTTGACGAGGGTTTCTGGGAAGAACTGTTCAGTGAAAATTTTGAGGGTGAAATAGACATTCCAAGCACTGAAGGTGAAGATGAAGATGTCAATGTCTTGGCCAATCGCTTAGGCTACTTGGGTTCTAGTCCTAAGTAA 1077 0.4513 MDYPYTVKEEYLEASSSHSRGEVPTISPPQPIEGLHELGPPPFLTKTFDVVDDPATNHMVSWSRVGTSFVVWDPHAFSVSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLRNIRRRKAPANVSLSQQAQQQGHCVEVGRFGLDEEIDRLKRDKQVLMMELVRLRQQQQNTRSYLQAMEQRLQGTEKKQQQMMAFLARAMKNPAFLQQLLQQKEKRKELEEAITKKRRRPIEQGPNCVGESSSGVEAINPIKAEPLEFSNYGFEVSELEVLALEMQGYGRGRREQEAPEEPRERLGKELDEGFWEELFSENFEGEIDIPSTEGEDEDVNVLANRLGYLGSSPK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3289 358 Coils Coil 162 182 - -
Prci3g3289 358 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Prci3g3289 358 Coils Coil 224 244 - -
Prci3g3289 358 Gene3D - 36 133 IPR036388 -
Prci3g3289 358 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g3289 358 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g3289 358 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g3289 358 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 252 IPR027725 -
Prci3g3289 358 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g3289 358 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g3289 358 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g3289 358 FunFam Heat shock transcription factor 1 36 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3289 Prci-Chr3 43789327 43793563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3289 25 356 HSF AT3G22830 55.526 9.03e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci3g3289 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3289 K09419 - gmx:100794264 518.85