Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3246 ATGGCCATGGAAGTTATTGGGCTCAAGCAGGAGAAGATGGGGTTCGAGGAAACAGAGCTGAGGCTTGGACTGCCTGGAAATGGAGGCTCGGCTTGTGAAGGAGGAGAAGCTGCGAGGAAGAGAGGGTTTTCTGAGACTGAGGATAATGCCACTGTGGATTTGAAGCTGAATCTCTCCTCTTCCAAAGAGGCTGATCATCCCACCGACAAACCCAAGGAGAAGACCCTCCTGCCCTCCGATCCCACCAAGCCTCCTGCCAAGGCTCAAGTGGTGGGATGGCCACCGGTGAGATCGTTCCGGAAGAACATGTTAGCGCCGAAGAAGAACGGAGAAGAGAGTGATCAGAAAAGCAGCCCTAACGGAAGCTTCGTGAAAGTGAGCATGGACGGAGCTCCTTATCTTCGCAAAGTGGACCTGAAGATGTACAAGAGTTATCAAGACCTGTCTGATGCCTTGGGCAACATGTTCAGCTCCTTCACCATTGGGAATTGTGGATCCCAAGGACTGAAGGATTTCATGAATGAGAGTAAGCTGATGGATCTGTTGAACAGCTCCGACTATGTCCCGACCTATGAGGACAAGGATGGCGACTGGATGCTTGTCGGTGACGTCCCTTGGGAGATGTTTGTTGAATCCTGTAAGCGCTTGCGTATTATGAAAGGAAAGGAGGCTATTGGGCTTGCACCAAGAGCCGTGGAGAAATGCAAGAACCGAAGCTAG 720 0.5139 MAMEVIGLKQEKMGFEETELRLGLPGNGGSACEGGEAARKRGFSETEDNATVDLKLNLSSSKEADHPTDKPKEKTLLPSDPTKPPAKAQVVGWPPVRSFRKNMLAPKKNGEESDQKSSPNGSFVKVSMDGAPYLRKVDLKMYKSYQDLSDALGNMFSSFTIGNCGSQGLKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3246 239 ProSiteProfiles PB1 domain profile. 121 221 IPR000270 GO:0005515
Prci3g3246 239 SUPERFAMILY CAD & PB1 domains 116 220 - -
Prci3g3246 239 MobiDBLite consensus disorder prediction 23 90 - -
Prci3g3246 239 MobiDBLite consensus disorder prediction 59 77 - -
Prci3g3246 239 Pfam AUX/IAA family 17 230 IPR033389 -
Prci3g3246 239 MobiDBLite consensus disorder prediction 104 124 - -
Prci3g3246 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 226 IPR003311 GO:0005634|GO:0006355
Prci3g3246 239 FunFam Auxin-responsive protein 116 231 - -
Prci3g3246 239 Gene3D - 115 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3246 Prci-Chr3 43548307 43550799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3246 104 224 B3 DNA Binding Superfamily AT3G61830 31.405 9.95e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci3g3246 AUX_IAA 3.4e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3246 K14484 - qsu:112007559 363.614