Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3240 ATGATACGTGGACGAGAGGGGACGGATTGGGCTGATAAAGAAACGATGGCGAATCAGGTAGTCAAAGTTCAGAGGGAAACGATTGTAGCATGCATGACCTGCCCACTTTGCAACAAGTTGTTCAGAGACGCCACCACCATATCTGAGTGCCTTCATACGTTTTGCAGGAAATGCATCTATGATAAAATTACAGATGAGGAATTAGAACAGTGTCCAATCTGTAATATTGATCTGGGTTGTGTTCCGCTTGAGAAATTAAGGCCAGACCATAATTTACAAGATGTAAGAGCTAAAATTTTCCCTTTGAAGAGAAGAAGCAAAACACCTGAGGCCTTTCCCTCTATAACAATACCAGCAAGAAGAAAGGAGAGATCGCTTTCATCTTTGGTTGTCATCACTCCCAGAGTATCAACACAGGTAACCATGACTGGGAGAAGAACAAAACCTACTAGAAAGGCCAGTGGTCTTCGAGCCTCTAGTTTTCCCATTGAAAAGCCTGTAAAAAAAGAGGAATCAGTAGAAGATCATACAGAGAGTTCAAGCTCGCCAGACACTGTGAACAAGTTTACTCAGAATACCAGACAGAGTTTGCCCCCTCTTGAGTCTAGCCAATCCTTACACACCAAAGAAAAAGATGATGGAGCGGAACCATGGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAAGTGGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAAGGGTCTGATGCCAAACTAGAACCTGTGCAAATAAATGAAAACGACACTCAAGGGCAAAAATCCAAAAATAAAGAGAATAAGCGCAAAGCGAAAGTTGAGAATGAAAAAGTTGACATTGATCCTCTCTCTTTAAATACAGTAAAGCCTAATAAATTGCGGAAAGTTCGTCGTAAAAGGGAACATCATTTTGGAGAACCAGGCATATCACCTCAAGCTGTTCTGGATGCAAACAGTGCTACATTCAAAAGGAGAACTGGTCCACTTTGGTTTGCCTTAGTAGCTTCTGAAGATCAGGAAGGAGACACACCTGTGCCCCAAATTCCTGCAAGTTATTTAAGAATAAAGGATGGAAGTTTACCTGTGTCATTTATCCAAAAATATCTAATGAAGAAACTAGACCTGAGCAGTGAAACTGAGGTTGAGATTAAATGCATGGGGCAGCCAGTGGTCCCTACGCTGCAGCTATGTAGTTTGGTTGACTTGTGGCTGCAGACTGCATCTACGACACAGCGAATTCCAGCAACGATTGGGTCCTCGGCAAAGGAATTTGTAATGGTTCTAGCATATACGCGCAAAGTTCCACACCCTTGA 1329 0.4221 MIRGREGTDWADKETMANQVVKVQRETIVACMTCPLCNKLFRDATTISECLHTFCRKCIYDKITDEELEQCPICNIDLGCVPLEKLRPDHNLQDVRAKIFPLKRRKXKTPEAFPSITIPARRKERSLSSLVVITPRVSTQVTMTGRRTKPTRKASGLRASSFPIEKPVKKEESVEDHTESSSSPDTVNKFTQNTRQSLPPLESSQSLHTKEKDDGAEPWEAKLDLWKPLNCLVEVASRSKSFKSSVQGSDAKLEPVQINENDTQGQKSKNKENKRKAKVENEKVDIDPLSLNTVKPNKLRKVRRKREHHFGEPGISPQAVLDANSATFKRRTGPLWFALVASEDQEGDTPVPQIPASYLRIKDGSLPVSFIQKYLMKKLDLSSETEVEIKCMGQPVVPTLQLCSLVDLWLQTASTTQRIPATIGSSAKEFVMVLAYTRKVPHP 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3240 443 MobiDBLite consensus disorder prediction 180 205 - -
Prci3g3240 443 CDD RING-HC_PCGF 32 75 - -
Prci3g3240 443 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 16 439 IPR044807 GO:0004842
Prci3g3240 443 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Prci3g3240 443 MobiDBLite consensus disorder prediction 164 179 - -
Prci3g3240 443 FunFam Polycomb group RING finger protein 3 18 116 - -
Prci3g3240 443 SMART ring_2 34 74 IPR001841 -
Prci3g3240 443 SUPERFAMILY RING/U-box 27 98 - -
Prci3g3240 443 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Prci3g3240 443 MobiDBLite consensus disorder prediction 252 280 - -
Prci3g3240 443 MobiDBLite consensus disorder prediction 265 280 - -
Prci3g3240 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 121 IPR013083 -
Prci3g3240 443 MobiDBLite consensus disorder prediction 141 215 - -
Prci3g3240 443 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3240 Prci-Chr3 43486499 43493084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3240 17 362 C3H Transcription Factor Family AT2G30580 55.014 3.11e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3240 K16277 - gmx:100793731 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g2419 1 44359744 44366272 Prci3g3240 3 43486499 43493084 CCT