Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3234 ATGGCGACGGAAGAGCCCGCTGTAGTTGTCGAGTCTGTACCGGAGCCAGTTGTTGCTGAGCCAGCCGAGGAGAAAGAGGTCGCAGATGCTGGTGGCAAGGCCAAGAAGGCTAAGGAGCCAAAGCCCAAAAAAGCTGCTGCTCCTAGATCTCGAAACCCTCCTGCGCATCCTCCCTATGAAGAGATGATCAAGGACGCAATTGTTACGCTGAAGGAGAGGACTGGTTCTAGTCAGTACGCGATTACCAAGTTTATGGAAGAGAAATACAAGCAGCTTCCATCCAATTTCAGGAAGATTGTGTTAAGCCAATCTAAGAAGCTTGTGGCTGCCGGAAGGCTTGTCAAGGTCAAGGGATCATTCAAGCTTCCCTCTGTTAAGTCATCGGCACCAAAGGCATCTGGGAATTCTGCTCCGGCAAAGAAGCCGGCAGCTGCTAAGCCCAAGGCTAAACCAGCTTCTAAGCCGAAGGAGACGAAATCAATCAAGGCGGCCACTAAAGCGCGCCCTAAGCCCAAAGCAGTCGCCAAGGCAAAGTCTAAAGCAGCTGTCAAGCCTAAGGCGGCTCCGAAGCCGAAGGCCGCTGCGGTGAAGCCCAAGGCCGCTCCGGCGAAGCCAAAGGCTGCTGCCTCGAAGCCAAAAGCTGCTGCTAAGCCCAAGGCTGCTGCAAGACCGAAGGCCAAGGAGAGGCCAGCCAAGGCTTCGAGGACATCGACCAGGACATCCCCTGGCAAGAAGGCCCCTGCTCCTAAACCGGCACCAAAGAAGGCTGCGGCTTCCAAGAAAGCTCCTGCTAAAGGCGTCAAGCCCAAGACGGTGAAGTCTCCGGCAAAGAAGGCTGCGACAAAGAGAGGAAGGAAGTGA 861 0.5505 MATEEPAVVVESVPEPVVAEPAEEKEVADAGGKAKKAKEPKPKKAAAPRSRNPPAHPPYEEMIKDAIVTLKERTGSSQYAITKFMEEKYKQLPSNFRKIVLSQSKKLVAAGRLVKVKGSFKLPSVKSSAPKASGNSAPAKKPAAAKPKAKPASKPKETKSIKAATKARPKPKAVAKAKSKAAVKPKAAPKPKAAAVKPKAAPAKPKAAASKPKAAAKPKAAARPKAKERPAKASRTSTRTSPGKKAPAPKPAPKKAAASKKAPAKGVKPKTVKSPAKKAATKRGRK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3234 286 MobiDBLite consensus disorder prediction 150 164 - -
Prci3g3234 286 CDD H15 53 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci3g3234 286 MobiDBLite consensus disorder prediction 119 286 - -
Prci3g3234 286 PANTHER HISTONE H1 32 268 - -
Prci3g3234 286 MobiDBLite consensus disorder prediction 1 61 - -
Prci3g3234 286 FunFam Histone H1 50 135 - -
Prci3g3234 286 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci3g3234 286 MobiDBLite consensus disorder prediction 271 286 - -
Prci3g3234 286 SUPERFAMILY "Winged helix" DNA-binding domain 52 132 IPR036390 -
Prci3g3234 286 MobiDBLite consensus disorder prediction 18 46 - -
Prci3g3234 286 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci3g3234 286 MobiDBLite consensus disorder prediction 165 185 - -
Prci3g3234 286 PRINTS Histone H5 signature 150 164 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci3g3234 286 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci3g3234 286 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci3g3234 286 PRINTS Histone H5 signature 202 221 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci3g3234 286 PRINTS Histone H5 signature 180 197 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Prci3g3234 286 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci3g3234 286 Gene3D - 51 132 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3234 Prci-Chr3 43436962 43438271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3234 50 124 Single Myb Histone (SMH) Gene Family AT1G49950 34.615 2.06e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3234 K11275 - tcc:18613215 172.94