Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3223 ATGTGCTTCACCTGTCTCTTCCTCGGTCCTTCTGCTTCTATAATACCCTCTGATCCTCTCTCCATTTCCGCATCAAAATTCACTCTCATGGAATTCAGAAACACAGAAGAGTCCAGGAGCTCCAGCGAAGAAACCGATGATACGACGGGGATTGGCAGATCCTACGAGTGCGTGTTTTGCAAGAGAGGCTTCACTACCGCACAAGCTCTGGGAGGACACATGAATATACACAGGAAGGATAGAGCCAAAACCAAGCCCAGTCTTGGTCCTTCATCTTCAAGCAAACTTGTGGATCTCAGCTTCTATTCTGCACATCCTGGAAATTACTATTTAACAACCACTCCTGAGGTAGATAGTAATTGCCCTCAATTTTATCATCCCGGTACAATCAGATCGTCTTCGCATGTACAGTTTGGAGATCGGGACGTGTTTGGACCTGGTTGGAGGGCCCGAAGCTCGAGCTTGTGCGCAGTGCGTGACAAGGTACAAGACAATATACCAGACGATGGGCTGGATTTGGAGCTTCGACTGGGTTATCAGCCATAG 546 0.4799 MCFTCLFLGPSASIIPSDPLSISASKFTLMEFRNTEESRSSSEETDDTTGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKTKPSLGPSSSSKLVDLSFYSAHPGNYYLTTTPEVDSNCPQFYHPGTIRSSSHVQFGDRDVFGPGWRARSSSLCAVRDKVQDNIPDDGLDLELRLGYQP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3223 181 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Prci3g3223 181 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Prci3g3223 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Prci3g3223 181 PANTHER OS07G0101800 PROTEIN 36 180 - -
Prci3g3223 181 Gene3D Classic Zinc Finger 31 99 - -
Prci3g3223 181 Pfam C2H2-type zinc finger 55 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3223 Prci-Chr3 43298517 43299357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3223 38 178 C2H2 Transcription Factor Family AT3G09290 34.194 2.13e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g3223 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3223 - - pcin:129304518 353.599