Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g3222 ATGGCTTCTGGTGGCTCTGGTTCTGGTTCTCCCTGCGGGGCTTGCAAGTTCCTCAGACGAAAGTGCGCCGCGGACTGCATATTTGCGCCGTACTTCTGCTCCGACCAAGGCCCTGCTAGATTTGCAGCAATTCATAAGGTGTTCGGGGCTAGCAATGTTTCTAAATTGCTCTTGCATATACCCGCTCGTGATCGCTGTGAGGCCGTCGTCACTATAACGTATGAAGCCCAGGCTCGGATCAGAGACCCTGTTTATGGTTGTGTCTCTCACATTTTTGCCTTGCAACAACAGGTGGCGTGCCTGCAAGCGCAACTGATGCAAGTGAAGGCTCCTGCGCAGAAGAACGTAATGGAAACCAGGAACGTTGAAAACCAGCGGGGAGGGAATCATAATATTGTGGGTGGACAAGCAATGAATGCATACAACATGAACCCTATATCTCCTCAGAGCTCTCTCGAGTCAATTAACCACAACATCGGTGATGGAATTAACGTGCAAGATATACGAAGCAGGGAGGATTCGTCATTCCCCAAACGAAGGTCTTACAACAATGACTTGGGTGAGCTCCATCAGCTTGCGCTGAGGATGATGAGGAATTAA 600 0.4983 MASGGSGSGSPCGACKFLRRKCAADCIFAPYFCSDQGPARFAAIHKVFGASNVSKLLLHIPARDRCEAVVTITYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQXAQKNVMETRNVENQRGGNHNIVGGQAMNAYNMNPISPQSSLESINHNIGDGINVQDIRSREDSSFPKRRSYNNDLGELHQLALRMMRN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g3222 200 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 133 - -
Prci3g3222 200 Coils Coil 91 111 - -
Prci3g3222 200 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Prci3g3222 200 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g3222 Prci-Chr3 43278927 43280636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g3222 1 200 AS2 family AT2G42430 51.020 2.24e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci3g3222 LOB 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g3222 K13944 - gmx:100801508 290.812